RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA177642" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA177642 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13119280 13119280 PRJNA177642_P_NODE_17411_length_167_cov_1.028986_g16186_i0 PRJNA177642 17411 167 1.028986 1.71840662 Bacteria 2 Bacteria Bacteria 100 9.6e-24   NR MDE2506368.1 2026780 g16186 i0 87.3 3.93413173652695 55 7 98.8 0 1 165 74 128 MDE2506368.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase [Planctomycetota bacterium] diamond 657 100 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
26852685 26852685 PRJNA177642_P_NODE_15821_length_180_cov_1.688742_g14596_i0 PRJNA177642 15821 180 1.688742 3.0397356 Planctomycetota bacterium 2026780 Bacteria Bacteria 61.6 3.62e-9   NR HEY3322403.1 2026780 g14596 i0 62.3 3.38333333333333 61 16 90 1 162 1 670 730 HEY3322403.1 Ig-like domain repeat protein [Planctomycetota bacterium] diamond 609 61.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28007879 28007879 PRJNA177642_P_NODE_18865_length_157_cov_3.117188_g17640_i0 PRJNA177642 18865 157 3.117188 4.89398516 Planctomycetota 203682 Bacteria Bacteria 69.3 4.67e-12   NR MBN2560503.1 2026778 g17640 i0 58.8 9.74522292993631 51 21 97.5 0 3 155 265 315 MBN2560503.1 protein kinase [Phycisphaerae bacterium] diamond 1530 69.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
31577222 31577222 PRJNA177642_P_NODE_10836_length_338_cov_0.987055_g9612_i0 PRJNA177642 10836 338 0.987055 3.3362459 Pseudomonadati 3379134 Bacteria Bacteria 57.4 7.57e-7   NR MCH8270949.1 2026780 g9612 i0 100 0.532544378698225 30 0 26.6 0 241 330 268 297 MCH8270949.1 asparaginase [Planctomycetota bacterium] diamond 180 57.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;