RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA177642" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA177642 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31147766 31147766 PRJNA177642_P_NODE_17395_length_167_cov_1.043478_g16170_i0 PRJNA177642 17395 167 1.043478 1.74260826 Dictyostelium purpureum 5786 Evosea other_Eukaryota 79 2.27e-15   NR XP_003291181.1 5786 g16170 i0 67.9 0.952095808383233 53 17 95.2 0 160 2 523 575 XP_003291181.1 5'-nucleotidase [Dictyostelium purpureum] diamond 159 79 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
32823583 32823583 PRJNA177642_P_NODE_18440_length_163_cov_1.014925_g17215_i0 PRJNA177642 18440 163 1.014925 1.65432775 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 94.7 6.16e-21   NR YP_003540845.1 5778 g17215 i0 77.4 1.95092024539877 53 12 97.5 0 162 4 649 701 YP_003540845.1 hypothetical protein HaveOM_p34 [Vermamoeba vermiformis] diamond 318 94.7 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;