RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA169559" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA169559 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27597396 27597396 PRJNA169559_P_NODE_29404_length_268_cov_1.309623_g27328_i0 PRJNA169559 29404 268 1.309623 3.50978964 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.2 5.52e-5   NR VDD79452.1 53468 g27328 i0 57.9 0.83955223880597 38 16 42.5 0 115 2 3903 3940 VDD79452.1 unnamed protein product [Mesocestoides corti] diamond 225 51.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Mesocestoididae Mesocestoides Mesocestoides corti
28652992 28652992 PRJNA169559_P_NODE_30927_length_261_cov_1.060345_g28851_i0 PRJNA169559 30927 261 1.060345 2.76750045 Fasciola hepatica 6192 Platyhelminthes Platyhelminthes 44.3 0.0132   NR THD21587.1 6192 g28851 i0 36.7 0.908045977011494 79 48 90.8 1 24 260 163 239 THD21587.1 RNA helicase [Fasciola hepatica] diamond 237 44.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola hepatica
29631460 29631460 PRJNA169559_P_NODE_1610_length_1297_cov_9.151420_g947_i0 PRJNA169559 1610 1297 9.15142 118.6939174 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 99.4 1.66e-18   NR PAA86220.1 282301 g947 i0 32.9 0.372397841171935 161 107 37 1 641 162 76 236 PAA86220.1 hypothetical protein BOX15_Mlig009159g3 [Macrostomum lignano] diamond 483 99.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
29916156 29916156 PRJNA169559_P_NODE_9631_length_547_cov_3.459459_g7902_i0 PRJNA169559 9631 547 3.459459 18.92324073 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 79.7 9.74e-14   NR PAA93605.1 282301 g7902 i0 29.9 0.915904936014625 167 112 91.6 3 47 547 260 421 PAA93605.1 hypothetical protein BOX15_Mlig031413g1 [Macrostomum lignano] diamond 501 79.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
30010898 30010898 PRJNA169559_P_NODE_691_length_2002_cov_2.731880_g323_i0 PRJNA169559 691 2002 2.73188 54.6922376 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 62 1.18e-5   NR PAA67471.1 282301 g323 i0 25.7 1.01298701298701 171 79 25.5 3 1841 1332 5569 5692 PAA67471.1 hypothetical protein BOX15_Mlig033701g1 [Macrostomum lignano] diamond 2028 62 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
31369737 31369737 PRJNA169559_P_NODE_10096_length_533_cov_14.305556_g948_i1 PRJNA169559 10096 533 14.305556 76.24861348 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 62 1.21e-7   NR PAA93605.1 282301 g948 i1 30.5 1.32833020637899 118 81 66.4 1 450 97 328 444 PAA93605.1 hypothetical protein BOX15_Mlig031413g1 [Macrostomum lignano] diamond 708 62 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
32904181 32904181 PRJNA169559_P_NODE_4760_length_776_cov_3.033467_g3472_i0 PRJNA169559 4760 776 3.033467 23.53970392 Metazoa 33208 Platyhelminthes Platyhelminthes 105 2.02e-22   NR KAF7259451.1 59628 g3472 i0 32.6 2.64432989690722 230 132 86.6 9 104 775 103 315 KAF7259451.1 hypothetical protein EG68_03045 [Paragonimus skrjabini miyazakii] diamond 2052 105 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus skrjabini miyazakii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;