RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA169559" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA169559 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30073789 30073789 PRJNA169559_P_NODE_48892_length_152_cov_1.195122_g46815_i0 PRJNA169559 48892 152 1.195122 1.81658544 Silvanigrellales bacterium 2767476 Bacteria Bacteria 73.2 1.69e-13   NR MCA2960788.1 2767476 g46815 i0 76 3.90789473684211 50 11 98.7 1 151 2 213 261 MCA2960788.1 S-methyl-5-thioribose-1-phosphate isomerase [Silvanigrellales bacterium] diamond 594 73.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales     Silvanigrellales bacterium
30421843 30421843 PRJNA169559_P_NODE_11153_length_504_cov_2.749474_g9334_i0 PRJNA169559 11153 504 2.749474 13.85734896 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 90.5 1.74e-19   NR HVJ64814.1 3034175 g9334 i0 35.4 2.54166666666667 144 84 82.7 3 6 422 20 159 HVJ64814.1 GyrI-like domain-containing protein [Bdellovibrionota bacterium] diamond 1281 90.5 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30800504 30800504 PRJNA169559_P_NODE_36214_length_244_cov_2.083721_g34137_i0 PRJNA169559 36214 244 2.083721 5.08427924 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 48.1 4.54e-4   NR MBY0414320.1 2053517 g34137 i0 47.8 1.13114754098361 46 22 56.6 1 10 147 264 307 MBY0414320.1 NAD(P)-dependent alcohol dehydrogenase [Bdellovibrionales bacterium] diamond 276 48.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32854939 32854939 PRJNA169559_P_NODE_44740_length_218_cov_2.333333_g42663_i0 PRJNA169559 44740 218 2.333333 5.08666594 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 122 7.12e-31   NR MCB0368368.1 2053517 g42663 i0 86.1 0.990825688073395 72 8 99.1 1 2 217 305 374 MCB0368368.1 hypothetical protein [Bdellovibrionales bacterium] diamond 216 122 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;