RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA169559" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Metamonada · 12 ✖

bioproject 1

  • PRJNA169559 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26725327 26725327 PRJNA169559_P_NODE_26261_length_289_cov_2.226923_g24185_i0 PRJNA169559 26261 289 2.226923 6.43580747 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 52.4 8.31e-6   NR XP_067773928.1 135588 g24185 i0 33.7 1.57785467128028 89 57 90.3 1 289 29 25 113 XP_067773928.1 centrin [Histomonas meleagridis] diamond 456 52.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27737632 27737632 PRJNA169559_P_NODE_7624_length_615_cov_5.858362_g6055_i0 PRJNA169559 7624 615 5.858362 36.0289263 Giardia intestinalis 5741 Fornicata other_Eukaryota 46.6 0.0365   NR ESU41510.1 5741 g6055 i0 30.6 0.590243902439024 121 59 47.3 4 54 344 239 358 ESU41510.1 Variant-specific surface protein [Giardia intestinalis] diamond 363 46.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
28084521 28084521 PRJNA169559_P_NODE_11925_length_487_cov_24.792576_g10079_i0 PRJNA169559 11925 487 24.792576 120.73984512 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 83.2 2.37e-16   NR KAJ3452455.1 1746091 g10079 i0 43.2 5.55030800821355 95 52 58.5 2 473 189 1 93 KAJ3452455.1 40S ribosomal protein S10 [Anaeramoeba flamelloides] diamond 2703 83.2 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
28210750 28210750 PRJNA169559_P_NODE_8786_length_573_cov_9.672794_g7118_i0 PRJNA169559 8786 573 9.672794 55.42510962 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 112 1.1e-27   NR KAG9392754.1 201153 g7118 i0 39.7 0.910994764397906 174 90 89 7 572 63 1 163 KAG9392754.1 Translationally controlled tumor protein [Carpediemonas membranifera] diamond 522 112 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
28242335 28242335 PRJNA169559_P_NODE_29546_length_267_cov_2.025210_g27470_i0 PRJNA169559 29546 267 2.02521 5.4073107 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 47 0.00147   NR XP_067762644.1 348837 g27470 i0 45.2 0.471910112359551 42 23 47.2 0 266 141 54 95 XP_067762644.1 Cysteine-rich membrane protein 1 [Spironucleus salmonicida] diamond 126 47 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
28242339 28242339 PRJNA169559_P_NODE_44326_length_221_cov_2.088542_g42249_i0 PRJNA169559 44326 221 2.088542 4.61567782 Blattamonas nauphoetae 2049346 Preaxostyla other_Eukaryota 46.2 0.0016   NR KAK2961441.1 2049346 g42249 i0 58.8 0.461538461538462 34 14 46.2 0 192 91 267 300 KAK2961441.1 putative protein kinase [Blattamonas nauphoetae] diamond 102 46.2 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida   Blattamonas Blattamonas nauphoetae
28526867 28526867 PRJNA169559_P_NODE_547_length_2339_cov_5.006494_g230_i0 PRJNA169559 547 2339 5.006494 117.10189466 Kipferlia bialata 797122 Fornicata other_Eukaryota 52.8 0.00961   NR GIQ80334.1 797122 g230 i0 26.3 0.262932877297991 205 131 24 7 1684 1124 719 921 GIQ80334.1 hypothetical protein KIPB_001114, partial [Kipferlia bialata] diamond 615 52.8 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
30136735 30136735 PRJNA169559_P_NODE_45332_length_211_cov_2.159341_g43255_i0 PRJNA169559 45332 211 2.159341 4.55620951 Streblomastix strix 222440 Preaxostyla other_Eukaryota 50.1 3.31e-5   NR KAA6365191.1 222440 g43255 i0 54.1 0.5260663507109 37 17 52.6 0 84 194 70 106 KAA6365191.1 MAG: hypothetical protein EZS28_039282, partial [Streblomastix strix] diamond 111 50.1 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Streblomastigidae Streblomastix Streblomastix strix
30200084 30200084 PRJNA169559_P_NODE_8852_length_571_cov_4.339483_g7183_i0 PRJNA169559 8852 571 4.339483 24.77844793 Kipferlia bialata 797122 Fornicata other_Eukaryota 47.8 0.0117   NR GIQ83316.1 797122 g7183 i0 33.7 0.45183887915937 86 46 45.2 2 268 11 45 119 GIQ83316.1 hypothetical protein KIPB_004620 [Kipferlia bialata] diamond 258 47.8 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
31401332 31401332 PRJNA169559_P_NODE_20436_length_367_cov_2.032544_g18390_i0 PRJNA169559 20436 367 2.032544 7.45943648 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 97.1 1.07e-21   NR KAJ3423361.1 1746091 g18390 i0 44.7 1.00544959128065 123 63 99.7 3 2 367 115 233 KAJ3423361.1 proteasome subunit alpha type-1 [Anaeramoeba flamelloides] diamond 369 97.1 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
32381903 32381903 PRJNA169559_P_NODE_19639_length_379_cov_1.397143_g17607_i0 PRJNA169559 19639 379 1.397143 5.29517197 Giardia muris 5742 Fornicata other_Eukaryota 51.6 1.32e-4   NR TNJ26588.1 5742 g17607 i0 48.8 0.688654353562005 43 22 34 0 116 244 147 189 TNJ26588.1 pVSP [Giardia muris] diamond 261 51.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
32603163 32603163 PRJNA169559_P_NODE_33400_length_252_cov_1.937220_g31323_i0 PRJNA169559 33400 252 1.93722 4.8817944 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 60.1 1.04e-8   NR XP_068346228.1 1144522 g31323 i0 49.2 2.75 61 31 72.6 0 18 200 111 171 XP_068346228.1 small GTP-binding protein [Tritrichomonas foetus] diamond 693 60.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;