RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA168635 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29189860 29189860 PRJNA168635_P_NODE_15409_length_204_cov_3.748387_g14993_i0 PRJNA168635 15409 204 3.748387 7.64670948 Haploplasma sp. 2903113 Bacteria Bacteria 55.8 5.24e-7   NR HKL95027.1 2903113 g14993 i0 54.2 0.705882352941177 48 22 70.6 0 191 48 418 465 HKL95027.1 DEAD/DEAH box helicase family protein [Haploplasma sp.] diamond 144 55.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma sp.
30642469 30642469 PRJNA168635_P_NODE_14193_length_214_cov_2.460606_g13777_i0 PRJNA168635 14193 214 2.460606 5.26569684 Mycoplasmopsis arginini 2094 Bacteria Bacteria 70.9 9.24e-14   NR WP_282460045.1 2094 g13777 i0 76 0.700934579439252 50 12 70.1 0 2 151 67 116 WP_282460045.1 MazG nucleotide pyrophosphohydrolase domain-containing protein, partial [Mycoplasmopsis arginini] diamond 150 70.9 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
31116313 31116313 PRJNA168635_P_NODE_28655_length_165_cov_1.732759_g28239_i0 PRJNA168635 28655 165 1.732759 2.85905235 Mycoplasmopsis arginini 2094 Bacteria Bacteria 115 4.64e-31   NR WP_282460021.1 2094 g28239 i0 98.1 0.981818181818182 54 1 98.2 0 164 3 85 138 WP_282460021.1 portal protein, partial [Mycoplasmopsis arginini] diamond 162 115 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;