RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA168635 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16356743 16356743 PRJNA168635_P_NODE_34053_length_156_cov_2.401869_g33637_i0 PRJNA168635 34053 156 2.401869 3.74691564 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 97.8 4.37e-22   NR HMO52664.1 2212473 g33637 i0 84.3 19.6153846153846 51 8 98.1 0 3 155 281 331 HMO52664.1 carbamoyltransferase [Kiritimatiellia bacterium] diamond 3060 97.8 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
31843805 31843805 PRJNA168635_P_NODE_19277_length_185_cov_1.227941_g18861_i0 PRJNA168635 19277 185 1.227941 2.27169085 Kiritimatiellota bacterium 2599938 Bacteria Bacteria 85.9 9.6e-18   NR MCX7008892.1 2599938 g18861 i0 65 0.972972972972973 60 21 97.3 0 5 184 123 182 MCX7008892.1 trypsin-like peptidase domain-containing protein [Kiritimatiellota bacterium] diamond 180 85.9 1 Bacteria PVC group Pseudomonadati Kiritimatiellota         Kiritimatiellota bacterium
32002148 32002148 PRJNA168635_P_NODE_22418_length_175_cov_2.103175_g22002_i0 PRJNA168635 22418 175 2.103175 3.68055625 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 80.1 8.84e-16   NR MDD2348568.1 2212473 g22002 i0 63.8 0.994285714285714 58 21 99.4 0 1 174 137 194 MDD2348568.1 hypothetical protein [Kiritimatiellia bacterium] diamond 174 80.1 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;