RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA168635 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28589953 28589953 PRJNA168635_P_NODE_23827_length_172_cov_1.422764_g23411_i0 PRJNA168635 23827 172 1.422764 2.44715408 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 43.1 0.0108   NR XP_002678806.1 5762 g23411 i0 73.9 0.401162790697674 23 6 40.1 0 4 72 264 286 XP_002678806.1 uncharacterized protein NAEGRDRAFT_88215, partial [Naegleria gruberi] diamond 69 43.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29599918 29599918 PRJNA168635_P_NODE_30570_length_163_cov_1.807018_g30154_i0 PRJNA168635 30570 163 1.807018 2.94543934 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 88.2 1.22e-18   NR NP_066529.1 5762 g30154 i0 85.1 0.865030674846626 47 7 86.5 0 141 1 172 218 NP_066529.1 ribosomal protein S11 [Naegleria gruberi] diamond 141 88.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31717407 31717407 PRJNA168635_P_NODE_19997_length_182_cov_2.315789_g19581_i0 PRJNA168635 19997 182 2.315789 4.21473598 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 93.2 2.79e-20   NR XP_002677176.1 5762 g19581 i0 86 0.93956043956044 57 8 94 0 177 7 334 390 XP_002677176.1 uncharacterized protein NAEGRDRAFT_67572 [Naegleria gruberi] diamond 171 93.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;