RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA168635 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29505333 29505333 PRJNA168635_P_NODE_34290_length_155_cov_2.896226_g33874_i0 PRJNA168635 34290 155 2.896226 4.4891503 Fibrobacteria bacterium 2725311 Bacteria Bacteria 66.6 4.06e-11   NR MEO7778519.1 2725311 g33874 i0 62.7 0.987096774193548 51 18 98.7 1 155 3 286 335 MEO7778519.1 hypothetical protein [Fibrobacteria bacterium] diamond 153 66.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
29789474 29789474 PRJNA168635_P_NODE_25911_length_168_cov_1.747899_g25495_i0 PRJNA168635 25911 168 1.747899 2.93647032 Fibrobacterota bacterium 2052160 Bacteria Bacteria 71.2 1.22e-12   NR MBK9580281.1 2052160 g25495 i0 50 1 56 28 100 0 1 168 6 61 MBK9580281.1 phage terminase large subunit family protein [Fibrobacterota bacterium] diamond 168 71.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
29979134 29979134 PRJNA168635_P_NODE_31971_length_162_cov_0.920354_g31555_i0 PRJNA168635 31971 162 0.920354 1.49097348 Fibrobacter sp. 35828 Bacteria Bacteria 43.9 0.00481   NR MCQ2096779.1 35828 g31555 i0 45.9 0.685185185185185 37 20 68.5 0 118 8 480 516 MCQ2096779.1 hypothetical protein [Fibrobacter sp.] diamond 111 43.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;