RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA168635 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26870560 26870560 PRJNA168635_P_NODE_19001_length_186_cov_1.160584_g18585_i0 PRJNA168635 19001 186 1.160584 2.15868624 root 1 Root_unresolved Root_unresolved 41.6 0.0446   NR MDO4264092.1 47478 g18585 i0 66.7 1.87096774193548 30 10 48.4 0 136 47 422 451 MDO4264092.1 hypothetical protein [Deinococcus sp.] diamond 348 42 0.990476190476191 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
32083176 32083176 PRJNA168635_P_NODE_23638_length_172_cov_2.252033_g23222_i0 PRJNA168635 23638 172 2.252033 3.87349676 Deinococcus 1298 Bacteria Bacteria 87.4 2.17e-18   NR WP_050920762.1 502394 g23222 i0 71.4 4.76162790697674 56 16 97.7 0 171 4 256 311 WP_050920762.1 phage terminase large subunit [Deinococcus gobiensis] diamond 819 87.8 0.995444191343964 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;