RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Cryptomycota"

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tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA168635 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19490270 19490270 PRJNA168635_P_NODE_13536_length_220_cov_2.666667_g13120_i0 PRJNA168635 13536 220 2.666667 5.8666674 Rozella allomycis CSF55 988480 Fungi Fungi 82 7.33e-17   NR EPZ34692.1 988480 g13120 i0 66.2 4.28181818181818 65 21 87.3 1 197 6 190 254 EPZ34692.1 Nucleic acid-binding domain-containing protein [Rozella allomycis CSF55] diamond 942 82 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
27091768 27091768 PRJNA168635_P_NODE_17562_length_191_cov_2.098592_g17146_i0 PRJNA168635 17562 191 2.098592 4.00831072 Fungi 4751 Fungi Fungi 83.6 5.25e-17   NR EPZ31166.1 988480 g17146 i0 65.6 14.1361256544503 64 20 97.4 1 187 2 95 158 EPZ31166.1 60S ribosomal protein L3 [Rozella allomycis CSF55] diamond 2700 83.6 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
27958330 27958330 PRJNA168635_P_NODE_18625_length_187_cov_1.913043_g18209_i0 PRJNA168635 18625 187 1.913043 3.57739041 Rozella allomycis CSF55 988480 Fungi Fungi 59.3 1.77e-8   NR EPZ34240.1 988480 g18209 i0 65.7 0.561497326203209 35 12 56.1 0 105 1 28 62 EPZ34240.1 hypothetical protein O9G_001853 [Rozella allomycis CSF55] diamond 105 59.3 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
30863733 30863733 PRJNA168635_P_NODE_33194_length_158_cov_1181.376147_g32778_i0 PRJNA168635 33194 158 1181.376147 1866.57431226 Rozella allomycis CSF55 988480 Fungi Fungi 46.6 3.24e-5   NR RKP19416.1 988480 g32778 i0 66.7 0.626582278481013 33 11 62.7 0 119 21 8 40 RKP19416.1 hypothetical protein ROZALSC1DRAFT_14013, partial [Rozella allomycis CSF55] diamond 99 46.6 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;