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contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA168635 · 17 ✖

analysis 1

  • diamond · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24590672 24590672 PRJNA168635_P_NODE_18920_length_186_cov_1.510949_g18504_i0 PRJNA168635 18920 186 1.510949 2.81036514 Chordata 7711 Chordata Chordata 115 8.4e-29   NR XP_067958268.1 7769 g18504 i0 85.5 5 62 9 100 0 1 186 1 62 XP_067958268.1 large ribosomal subunit protein uL3-like [Myxine glutinosa] diamond 930 115 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
26820917 26820917 PRJNA168635_P_NODE_25701_length_169_cov_0.866667_g25285_i0 PRJNA168635 25701 169 0.866667 1.46466723 Staurois parvus 386267 Chordata Chordata 48.5 4.42e-5   NR CAI9603171.1 386267 g25285 i0 52.6 2.02366863905325 57 20 88.8 1 2 151 82 138 CAI9603171.1 unnamed protein product [Staurois parvus] diamond 342 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
26820918 26820918 PRJNA168635_P_NODE_26161_length_168_cov_0.873950_g25745_i0 PRJNA168635 26161 168 0.87395 1.468236 Eptesicus fuscus 29078 Chordata Chordata 55.8 2.82e-7   NR XP_054574273.1 29078 g25745 i0 57.1 2.78571428571429 42 17 75 1 131 6 84 124 XP_054574273.1 E3 ubiquitin-protein ligase TRIM48-like [Eptesicus fuscus] diamond 468 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Eptesicus Eptesicus fuscus
26978957 26978957 PRJNA168635_P_NODE_29882_length_164_cov_0.904348_g29466_i0 PRJNA168635 29882 164 0.904348 1.48313072 Centropus unirufus 1118519 Chordata Chordata 44.3 0.00368   NR NWR69771.1 1118519 g29466 i0 44.6 1.02439024390244 56 29 98.8 1 162 1 119 174 NWR69771.1 PUS7L protein [Centropus unirufus] diamond 168 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Cuculiformes Centropidae Centropus Centropus unirufus
27453337 27453337 PRJNA168635_P_NODE_23523_length_172_cov_4.130081_g23107_i0 PRJNA168635 23523 172 4.130081 7.10373932 Mus musculus 10090 Chordata Chordata 51.6 1.98e-6   NR BAE25547.1 10090 g23107 i0 63.9 0.627906976744186 36 13 62.8 0 39 146 75 110 BAE25547.1 unnamed protein product [Mus musculus] diamond 108 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27565490 27565490 PRJNA168635_P_NODE_28964_length_165_cov_0.896552_g28548_i0 PRJNA168635 28964 165 0.896552 1.4793108 Mammalia 40674 Chordata Chordata 50.8 1.79e-5   NR XP_039766690.1 9258 g28548 i0 41.5 1.92727272727273 53 30 96.4 1 163 5 1309 1360 XP_039766690.1 LOW QUALITY PROTEIN: proprotein convertase subtilisin/kexin type 5 [Ornithorhynchus anatinus] diamond 318 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
27989991 27989991 PRJNA168635_P_NODE_25285_length_169_cov_0.866667_g24869_i0 PRJNA168635 25285 169 0.866667 1.46466723 Hypanus sabinus 79690 Chordata Chordata 42.7 0.014   NR XP_059843193.1 79690 g24869 i0 41 1.40236686390533 39 23 69.2 0 10 126 412 450 XP_059843193.1 uncharacterized protein fam185a isoform X1 [Hypanus sabinus] diamond 237 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
28039370 28039370 PRJNA168635_P_NODE_27105_length_167_cov_0.881356_g26689_i0 PRJNA168635 27105 167 0.881356 1.47186452 root 1 Root_unresolved Root_unresolved 45.8 0.00107   NR XP_035671469.1 7739 g26689 i0 45.3 2.67664670658683 53 27 95.2 1 160 2 111 161 XP_035671469.1 neurocan core protein-like [Branchiostoma floridae] diamond 447 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28558363 28558363 PRJNA168635_P_NODE_19447_length_184_cov_1.807407_g19031_i0 PRJNA168635 19447 184 1.807407 3.32562888 Engystomops pustulosus 76066 Chordata Chordata 45.4 0.00195   NR KAG8571490.1 76066 g19031 i0 41.8 3.27717391304348 67 24 84.8 2 157 2 933 999 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 603 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28684719 28684719 PRJNA168635_P_NODE_23587_length_172_cov_2.739837_g23171_i0 PRJNA168635 23587 172 2.739837 4.71251964 Ambystoma mexicanum 8296 Chordata Chordata 41.6 0.0377   NR XP_069510081.1 8296 g23171 i0 39 0.715116279069767 41 25 71.5 0 171 49 463 503 XP_069510081.1 polypeptide N-acetylgalactosaminyltransferase 10 [Ambystoma mexicanum] diamond 123 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
28968759 28968759 PRJNA168635_P_NODE_10608_length_253_cov_3.161765_g10193_i0 PRJNA168635 10608 253 3.161765 7.99926545 Ciona intestinalis 7719 Chordata Chordata 50.8 5.72e-5   NR AAP91757.1 7719 g10193 i0 38.2 0.652173913043478 55 34 65.2 0 64 228 138 192 AAP91757.1 hypothetical protein cihA9B2, partial [Ciona intestinalis] diamond 165 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29554640 29554640 PRJNA168635_P_NODE_29490_length_164_cov_2.634783_g29074_i0 PRJNA168635 29490 164 2.634783 4.32104412 Chondrichthyes 7777 Chordata Chordata 88.2 7.41e-19   NR XP_067900346.1 7792 g29074 i0 81.1 55.2621951219512 53 10 97 0 162 4 264 316 XP_067900346.1 UDP-glucose pyrophosphorylase 2b isoform X3 [Heterodontus francisci] diamond 9063 88.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
29820947 29820947 PRJNA168635_P_NODE_18891_length_186_cov_1.861314_g18475_i0 PRJNA168635 18891 186 1.861314 3.46204404 Staurois parvus 386267 Chordata Chordata 42.4 0.0079   NR CAI9553625.1 386267 g18475 i0 44.9 0.790322580645161 49 18 72.6 2 185 51 8 51 CAI9553625.1 unnamed protein product, partial [Staurois parvus] diamond 147 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30453311 30453311 PRJNA168635_P_NODE_26813_length_167_cov_2.161017_g26397_i0 PRJNA168635 26813 167 2.161017 3.60889839 Zootoca vivipara 8524 Chordata Chordata 45.1 0.00205   NR XP_034992902.2 8524 g26397 i0 50 0.934131736526946 52 26 93.4 0 2 157 125 176 XP_034992902.2 platelet glycoprotein Ib alpha chain [Zootoca vivipara] diamond 156 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Zootoca Zootoca vivipara
30786845 30786845 PRJNA168635_P_NODE_22114_length_176_cov_1.629921_g21698_i0 PRJNA168635 22114 176 1.629921 2.86866096 Opisthokonta 33154 Chordata Chordata 48.1 1.39e-4   NR XP_070719662.1 55135 g21698 i0 44.2 5.60795454545455 43 22 73.3 1 172 44 115 155 XP_070719662.1 cornifelin-like isoform X1 [Pristiophorus japonicus] diamond 987 48.5 0.991752577319588 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
31418899 31418899 PRJNA168635_P_NODE_27076_length_167_cov_0.881356_g26660_i0 PRJNA168635 27076 167 0.881356 1.47186452 Opisthokonta 33154 Chordata Chordata 57 2.88e-8   NR XP_009993960.1 8897 g26660 i0 61.8 6.61077844311377 55 20 97 1 6 167 72 126 XP_009993960.1 PREDICTED: vesicle transport protein SFT2A [Chaetura pelagica] diamond 1104 57 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Chaetura Chaetura pelagica
32065350 32065350 PRJNA168635_P_NODE_18358_length_188_cov_1.582734_g17942_i0 PRJNA168635 18358 188 1.582734 2.97553992 Equus asinus 9793 Chordata Chordata 43.5 0.0094   NR XP_044631371.1 9793 g17942 i0 42.2 1.02127659574468 64 29 89.4 2 187 20 231 294 XP_044631371.1 carbohydrate deacetylase isoform X2 [Equus asinus] diamond 192 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus asinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;