RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Candidatus Binatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA168635 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27231920 27231920 PRJNA168635_P_NODE_24523_length_170_cov_2.314050_g24107_i0 PRJNA168635 24523 170 2.31405 3.933885 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 97.8 4.28e-22   NR HET7007533.1 2838779 g24107 i0 80.4 3.95294117647059 56 11 98.8 0 170 3 284 339 HET7007533.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Candidatus Binatia bacterium] diamond 672 97.8 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
32065363 32065363 PRJNA168635_P_NODE_31118_length_163_cov_0.912281_g30702_i0 PRJNA168635 31118 163 0.912281 1.48701803 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 62.4 1.59e-10   NR HEV8711372.1 2838779 g30702 i0 62.2 1.65644171779141 45 17 82.8 0 2 136 94 138 HEV8711372.1 HNH endonuclease [Candidatus Binatia bacterium] diamond 270 62.4 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
32697460 32697460 PRJNA168635_P_NODE_28120_length_166_cov_0.888889_g27704_i0 PRJNA168635 28120 166 0.888889 1.47555574 Candidatus Binatus sp. 2811406 Bacteria Bacteria 41.2 0.0203   NR HWH79615.1 2811406 g27704 i0 35.8 0.957831325301205 53 33 94 1 7 162 20 72 HWH79615.1 hypothetical protein [Candidatus Binatus sp.] diamond 159 41.2 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia Candidatus Binatales Candidatus Binataceae Candidatus Binatus Candidatus Binatus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;