RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA168635 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27168518 27168518 PRJNA168635_P_NODE_22542_length_175_cov_1.563492_g22126_i0 PRJNA168635 22542 175 1.563492 2.736111 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 42 0.0288   NR MBC7498779.1 2044595 g22126 i0 100 0.342857142857143 20 0 34.3 0 174 115 339 358 MBC7498779.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Candidatus Altimarinota bacterium] diamond 60 42 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30010880 30010880 PRJNA168635_P_NODE_25011_length_169_cov_1.725000_g24595_i0 PRJNA168635 25011 169 1.725 2.91525 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 95.5 8.13e-22   NR MFA6080076.1 2044595 g24595 i0 75 2.98224852071006 56 14 99.4 0 168 1 128 183 MFA6080076.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Candidatus Altimarinota bacterium] diamond 504 95.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32413571 32413571 PRJNA168635_P_NODE_28319_length_166_cov_0.888889_g27903_i0 PRJNA168635 28319 166 0.888889 1.47555574 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 79.7 6.77e-17   NR MBP7822784.1 2044595 g27903 i0 72.5 1.87951807228916 51 14 92.2 0 156 4 62 112 MBP7822784.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 312 79.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;