RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA168635 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4191740 4191740 PRJNA168635_P_NODE_33304_length_158_cov_3.669725_g32888_i0 PRJNA168635 33304 158 3.669725 5.7981655 Thermotogota bacterium 2053689 Bacteria Bacteria 66.6 4.35e-11   NR RKX37582.1 2053689 g32888 i0 70.8 4.61392405063291 48 11 91.1 1 2 145 334 378 RKX37582.1 MAG: molecular chaperone DnaK [Thermotogota bacterium] diamond 729 66.6 1 Bacteria   Thermotogati Thermotogota         Thermotogota bacterium
26870560 26870560 PRJNA168635_P_NODE_19001_length_186_cov_1.160584_g18585_i0 PRJNA168635 19001 186 1.160584 2.15868624 root 1 Root_unresolved Root_unresolved 41.6 0.0446   NR MDO4264092.1 47478 g18585 i0 66.7 1.87096774193548 30 10 48.4 0 136 47 422 451 MDO4264092.1 hypothetical protein [Deinococcus sp.] diamond 348 42 0.990476190476191 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
27565488 27565488 PRJNA168635_P_NODE_27124_length_167_cov_0.881356_g26708_i0 PRJNA168635 27124 167 0.881356 1.47186452 Bacteria 2 Bacteria Bacteria 99 3.76e-23   NR WP_333641243.1 1184387 g26708 i0 83.6 12.8443113772455 55 9 98.8 0 3 167 217 271 WP_333641243.1 DNA-methyltransferase [Mesotoga prima] diamond 2145 99.4 0.995975855130785 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga prima
28431977 28431977 PRJNA168635_P_NODE_22066_length_176_cov_2.031496_g21650_i0 PRJNA168635 22066 176 2.031496 3.57543296 Thermovirgaceae bacterium 3041276 Bacteria Bacteria 54.3 1.25e-6   NR MFA5674502.1 3041276 g21650 i0 47.2 0.903409090909091 53 25 85.2 1 8 157 440 492 MFA5674502.1 hypothetical protein [Thermovirgaceae bacterium] diamond 159 54.3 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Thermovirgaceae   Thermovirgaceae bacterium
30231887 30231887 PRJNA168635_P_NODE_30412_length_163_cov_3.535088_g29996_i0 PRJNA168635 30412 163 3.535088 5.76219344 Thermotoga sp. TBYP3.1.4.1 1587550 Bacteria Bacteria 45.8 9.8e-4   NR AJA38639.1 1587550 g29996 i0 67.6 1.76687116564417 34 11 62.6 0 128 27 223 256 AJA38639.1 hypothetical protein [Thermotoga sp. TBYP3.1.4.1] diamond 288 45.8 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. TBYP3.1.4.1
32083176 32083176 PRJNA168635_P_NODE_23638_length_172_cov_2.252033_g23222_i0 PRJNA168635 23638 172 2.252033 3.87349676 Deinococcus 1298 Bacteria Bacteria 87.4 2.17e-18   NR WP_050920762.1 502394 g23222 i0 71.4 4.76162790697674 56 16 97.7 0 171 4 256 311 WP_050920762.1 phage terminase large subunit [Deinococcus gobiensis] diamond 819 87.8 0.995444191343964 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;