RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA168635 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28337223 28337223 PRJNA168635_P_NODE_25446_length_169_cov_0.866667_g25030_i0 PRJNA168635 25446 169 0.866667 1.46466723 Fusobacterium sp. 68766 Bacteria Bacteria 71.2 1.22e-12   NR MFR9019965.1 68766 g25030 i0 61.1 0.958579881656805 54 21 95.9 0 168 7 541 594 MFR9019965.1 glycogen/starch/alpha-glucan phosphorylase [Fusobacterium sp.] diamond 162 71.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
29820953 29820953 PRJNA168635_P_NODE_26411_length_168_cov_0.873950_g25995_i0 PRJNA168635 26411 168 0.87395 1.468236 Fusobacteriota bacterium 2060921 Bacteria Bacteria 48.1 1.23e-4   NR MCX5773492.1 2060921 g25995 i0 88 0.446428571428571 25 3 44.6 0 1 75 182 206 MCX5773492.1 30S ribosomal protein S4 [Fusobacteriota bacterium] diamond 75 48.1 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteriota bacterium
30958689 30958689 PRJNA168635_P_NODE_30834_length_163_cov_0.912281_g30418_i0 PRJNA168635 30834 163 0.912281 1.48701803 Fusobacteriota bacterium 2060921 Bacteria Bacteria 101 1.81e-25   NR MCX5773355.1 2060921 g30418 i0 92.6 0.993865030674847 54 4 99.4 0 1 162 87 140 MCX5773355.1 NAD(P)H-dependent oxidoreductase subunit E [Fusobacteriota bacterium] diamond 162 101 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;