RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA168635" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA168635 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26838810 26838810 PRJNA168635_P_NODE_25901_length_168_cov_1.957983_g25485_i0 PRJNA168635 25901 168 1.957983 3.28941144 Bacteria 2 Bacteria Bacteria 88.6 6.37e-19   NR MEY8217458.1 2024889 g25485 i0 78.2 1.96428571428571 55 12 98.2 0 3 167 6 60 MEY8217458.1 DUF5309 family protein [SAR324 cluster bacterium] diamond 330 88.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30927196 30927196 PRJNA168635_P_NODE_19874_length_183_cov_1.261194_g19458_i0 PRJNA168635 19874 183 1.261194 2.30798502 SAR324 cluster bacterium 2024889 Bacteria Bacteria 48.9 1.1e-4   NR MDX2469221.1 2024889 g19458 i0 50 0.721311475409836 44 22 72.1 0 48 179 344 387 MDX2469221.1 YfhO family protein [SAR324 cluster bacterium] diamond 132 48.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
31179436 31179436 PRJNA168635_P_NODE_33015_length_159_cov_3.827273_g32599_i0 PRJNA168635 33015 159 3.827273 6.08536407 uncultured delta proteobacterium HF 34034 Bacteria Bacteria 55.5 1.39e-7   NR ADI17622.1 710828 g32599 i0 70.6 0.641509433962264 34 10 64.2 0 147 46 84 117 ADI17622.1 hypothetical protein [uncultured delta proteobacterium HF0130_19C20] diamond 102 55.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0130_19C20
32634345 32634345 PRJNA168635_P_NODE_19640_length_183_cov_4.917910_g19224_i0 PRJNA168635 19640 183 4.91791 8.9997753 SAR324 cluster bacterium 2024889 Bacteria Bacteria 60.5 9.16e-9   NR MEY8217461.1 2024889 g19224 i0 49.1 0.934426229508197 57 29 93.4 0 6 176 33 89 MEY8217461.1 hypothetical protein [SAR324 cluster bacterium] diamond 171 60.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;