RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1264536" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1264536 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29694544 29694544 PRJNA1264536_P_NODE_4770_length_249_cov_0.886364_g4696_i0 PRJNA1264536 4770 249 0.886364 2.20704636 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 165 6.62e-50   NR WP_294094715.1 527638 g4696 i0 100 1 83 0 100 0 249 1 108 190 WP_294094715.1 hypothetical protein [uncultured Cetobacterium sp.] diamond 249 165 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
30990318 30990318 PRJNA1264536_P_NODE_4714_length_250_cov_0.881356_g4640_i0 PRJNA1264536 4714 250 0.881356 2.20339 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 176 7.73e-53   NR WP_294093108.1 527638 g4640 i0 100 0.996 83 0 99.6 0 1 249 223 305 WP_294093108.1 L,D-transpeptidase [uncultured Cetobacterium sp.] diamond 249 176 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
31970434 31970434 PRJNA1264536_P_NODE_5258_length_244_cov_0.912281_g5184_i0 PRJNA1264536 5258 244 0.912281 2.22596564 unclassified Cetobacterium 2630983 Bacteria Bacteria 167 1.97e-49   NR WP_047384192.1 2630983 g5184 i0 100 0.995901639344262 81 0 99.6 0 1 243 164 244 WP_047384192.1 MULTISPECIES: VacJ family lipoprotein [unclassified Cetobacterium] diamond 243 167 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;