RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1264536" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1264536 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14393102 14393102 PRJNA1264536_P_NODE_5112_length_246_cov_0.901734_g5038_i0 PRJNA1264536 5112 246 0.901734 2.21826564 Planctomycetia 203683 Bacteria Bacteria 114 5.77e-28   NR HWG41202.1 2052164 g5038 i0 91.8 4.48780487804878 61 5 74.4 0 185 3 1 61 HWG41202.1 serine hydroxymethyltransferase [Gemmataceae bacterium] diamond 1104 114 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
27136682 27136682 PRJNA1264536_P_NODE_5242_length_244_cov_1.771930_g5168_i0 PRJNA1264536 5242 244 1.77193 4.3235092 Pirellulales bacterium 2715253 Bacteria Bacteria 48.1 4.61e-4   NR HEX4146591.1 2715253 g5168 i0 38.8 0.823770491803279 67 40 82.4 1 42 242 19 84 HEX4146591.1 DUF2092 domain-containing protein [Pirellulales bacterium] diamond 201 48.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium
29315985 29315985 PRJNA1264536_P_NODE_4649_length_250_cov_0.881356_g4575_i0 PRJNA1264536 4649 250 0.881356 2.20339 Akkermansia sp. 1872421 Bacteria Bacteria 60.1 3.19e-8   NR MBQ8517079.1 1872421 g4575 i0 71.7 0.552 46 13 55.2 0 138 1 1 46 MBQ8517079.1 hypothetical protein [Akkermansia sp.] diamond 138 60.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
32666022 32666022 PRJNA1264536_P_NODE_3760_length_281_cov_1.384615_g3686_i0 PRJNA1264536 3760 281 1.384615 3.89076815 Tepidisphaerales bacterium 2795155 Bacteria Bacteria 184 9.42e-52   NR MFI5381108.1 2795155 g3686 i0 87.1 2.97864768683274 93 12 99.3 0 2 280 577 669 MFI5381108.1 hypothetical protein [Tepidisphaerales bacterium] diamond 837 184 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales     Tepidisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;