RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1264536" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1264536 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
363906 363906 PRJNA1264536_P_NODE_5441_length_243_cov_0.894118_g5367_i0 PRJNA1264536 5441 243 0.894118 2.17270674 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 64.7 1.27e-10   NR MBR3323370.1 2026720 g5367 i0 81.1 1.82716049382716 37 7 45.7 0 3 113 144 180 MBR3323370.1 ribosome recycling factor [Candidatus Saccharibacteria bacterium] diamond 444 64.7 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
27231908 27231908 PRJNA1264536_P_NODE_4543_length_251_cov_0.876404_g4469_i0 PRJNA1264536 4543 251 0.876404 2.19977404 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 47 6.48e-4   NR HVS79340.1 2973664 g4469 i0 45.1 0.609561752988048 51 28 61 0 1 153 118 168 HVS79340.1 hypothetical protein [Candidatus Saccharimonadales bacterium] diamond 153 47 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
28179063 28179063 PRJNA1264536_P_NODE_4386_length_253_cov_0.866667_g4312_i0 PRJNA1264536 4386 253 0.866667 2.19266751 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 147 6.79e-39   NR MFA6007142.1 2053613 g4312 i0 86.9 1.99209486166008 84 11 99.6 0 253 2 600 683 MFA6007142.1 preprotein translocase subunit SecA [Candidatus Shapirobacteria bacterium] diamond 504 147 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;