RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1263632" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1263632 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15666678 15666678 PRJNA1263632_P_NODE_6473_length_251_cov_0.865169_g6455_i0 PRJNA1263632 6473 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 130 4.88e-35   NR XP_004336240.1 1257118 g6455 i0 73.5 4.91235059760956 83 22 99.2 0 3 251 93 175 XP_004336240.1 protein serine/threonine kinase [Acanthamoeba castellanii str. Neff] diamond 1233 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24590109 24590109 PRJNA1263632_P_NODE_8020_length_243_cov_0.905882_g8002_i0 PRJNA1263632 8020 243 0.905882 2.20129326 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.6 1.16e-11   NR XP_004347153.1 1257118 g8002 i0 43.2 1.88888888888889 81 43 97.5 2 238 2 12 91 XP_004347153.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff] diamond 459 66.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26630757 26630757 PRJNA1263632_P_NODE_1941_length_434_cov_1.692521_g1923_i0 PRJNA1263632 1941 434 1.692521 7.34554114 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.4 8.34e-4   NR XP_004351526.1 1257118 g1923 i0 34.2 0.504608294930876 73 48 50.5 0 403 185 26 98 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 219 47.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27042310 27042310 PRJNA1263632_P_NODE_8422_length_241_cov_0.916667_g8404_i0 PRJNA1263632 8422 241 0.916667 2.20916747 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 99.4 1.32e-24   NR XP_004353726.1 1257118 g8404 i0 53.2 1.87966804979253 77 36 95.9 0 239 9 4 80 XP_004353726.1 LIM domain containing protein [Acanthamoeba castellanii str. Neff] diamond 453 99.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28526833 28526833 PRJNA1263632_P_NODE_5247_length_276_cov_1.177340_g5229_i0 PRJNA1263632 5247 276 1.17734 3.2494584 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 102 4.64e-23   NR XP_004339395.1 1257118 g5229 i0 52.9 0.923913043478261 85 40 92.4 0 275 21 98 182 XP_004339395.1 5' nucleotidase family protein [Acanthamoeba castellanii str. Neff] diamond 255 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30073748 30073748 PRJNA1263632_P_NODE_6632_length_250_cov_0.870056_g6614_i0 PRJNA1263632 6632 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 1.09e-4   NR XP_004351526.1 1257118 g6614 i0 46.9 0.588 49 26 58.8 0 35 181 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31748899 31748899 PRJNA1263632_P_NODE_2577_length_379_cov_1.349673_g2559_i0 PRJNA1263632 2577 379 1.349673 5.11526067 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 139 8.81e-40   NR 7SOG_A 5755 g2559 i0 58.3 0.910290237467018 115 43 91 1 350 6 3 112 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 345 139 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31875407 31875407 PRJNA1263632_P_NODE_7637_length_245_cov_0.895349_g7619_i0 PRJNA1263632 7637 245 0.895349 2.19360505 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.5 6.24e-12   NR XP_004340550.1 1257118 g7619 i0 42.5 2.90204081632653 80 46 98 0 240 1 338 417 XP_004340550.1 ABC2 type transporter, putative [Acanthamoeba castellanii str. Neff] diamond 711 70.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;