RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1263632" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1263632 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27502685 27502685 PRJNA1263632_P_NODE_5843_length_262_cov_2.005291_g5825_i0 PRJNA1263632 5843 262 2.005291 5.25386242 Metazoa 33208 Chordata Chordata 85.9 2.45e-18   NR XP_066287101.1 7740 g5825 i0 55.3 2.61068702290076 76 32 87 1 32 259 31 104 XP_066287101.1 large ribosomal subunit protein uL6-like [Branchiostoma lanceolatum] diamond 684 85.9 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29757892 29757892 PRJNA1263632_P_NODE_8171_length_242_cov_0.911243_g8153_i0 PRJNA1263632 8171 242 0.911243 2.20520806 Equus asinus 9793 Chordata Chordata 53.1 7.83e-6   NR XP_014723931.2 9793 g8153 i0 36.3 4.42561983471074 80 51 99.2 0 242 3 34 113 XP_014723931.2 X-ray repair cross-complementing protein 6 isoform X1 [Equus asinus] diamond 1071 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus asinus
32192062 32192062 PRJNA1263632_P_NODE_7758_length_244_cov_0.900585_g7740_i0 PRJNA1263632 7758 244 0.900585 2.1974274 Branchiostoma belcheri 7741 Chordata Chordata 106 6.32e-25   NR XP_019620923.1 7741 g7740 i0 62.5 0.983606557377049 80 29 98.4 1 3 242 104 182 XP_019620923.1 PREDICTED: gastric triacylglycerol lipase-like [Branchiostoma belcheri] diamond 240 106 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;