RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1263632" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1263632 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2914487 2914487 PRJNA1263632_P_NODE_7063_length_248_cov_0.880000_g7045_i0 PRJNA1263632 7063 248 0.88 2.1824 Bacteria 2 Bacteria Bacteria 91.7 3.94e-22   NR MBL4845410.1 2026780 g7045 i0 57.5 9.49596774193548 80 34 96.8 0 248 9 3 82 MBL4845410.1 acyl-CoA-binding protein [Planctomycetota bacterium] diamond 2355 91.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27421777 27421777 PRJNA1263632_P_NODE_4643_length_291_cov_1.059633_g4625_i0 PRJNA1263632 4643 291 1.059633 3.08353203 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 170 6.82e-49   NR MCC6582002.1 2026777 g4625 i0 87.6 1 97 12 100 0 291 1 76 172 MCC6582002.1 hypothetical protein [Phycisphaeraceae bacterium] diamond 291 170 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
27597386 27597386 PRJNA1263632_P_NODE_7324_length_246_cov_0.890173_g7306_i0 PRJNA1263632 7324 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 42.7 0.04   NR HCG25484.1 2053569 g7306 i0 32.8 2.23170731707317 61 40 73.2 1 192 13 459 519 HCG25484.1 hypothetical protein [Lentisphaeria bacterium] diamond 549 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
30990315 30990315 PRJNA1263632_P_NODE_2354_length_396_cov_1.430341_g2336_i0 PRJNA1263632 2354 396 1.430341 5.66415036 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 113 5.31e-27   NR RYD71398.1 2026800 g2336 i0 47 1.01515151515152 134 60 97.7 4 395 9 131 258 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 402 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;