RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1262902" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1262902 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18215300 18215300 PRJNA1262902_P_NODE_7615_length_251_cov_0.865169_g7573_i0 PRJNA1262902 7615 251 0.865169 2.17157419 Proteiniclasticum sp. QWL- 2053595 Bacteria Bacteria 138 1.81e-38   NR WP_277852660.1 3036945 g7573 i0 84 1.94820717131474 81 13 96.8 0 243 1 78 158 WP_277852660.1 phosphate ABC transporter ATP-binding protein PstB [Proteiniclasticum sp. QWL-01] diamond 489 138 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Proteiniclasticum Proteiniclasticum sp. QWL-01
26789192 26789192 PRJNA1262902_P_NODE_3781_length_299_cov_1.159292_g3739_i0 PRJNA1262902 3781 299 1.159292 3.46628308 Laceyella putida 110101 Bacteria Bacteria 97.8 2.67e-21   NR WP_379863783.1 110101 g3739 i0 55.7 1.90635451505017 97 40 96.3 2 288 1 199 293 WP_379863783.1 M36 family metallopeptidase [Laceyella putida] diamond 570 97.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Thermoactinomycetaceae Laceyella Laceyella putida
28558350 28558350 PRJNA1262902_P_NODE_8047_length_250_cov_0.870056_g8005_i0 PRJNA1262902 8047 250 0.870056 2.17514 Pseudobutyrivibrio sp. 2014367 Bacteria Bacteria 42.7 0.0396   NR WP_294316121.1 2014367 g8005 i0 37 0.648 54 34 64.8 0 37 198 7 60 WP_294316121.1 baseplate J/gp47 family protein [Pseudobutyrivibrio sp.] diamond 162 42.7 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp.
29916113 29916113 PRJNA1262902_P_NODE_12391_length_241_cov_0.916667_g12349_i0 PRJNA1262902 12391 241 0.916667 2.20916747 Streptococcus anginosus 1328 Bacteria Bacteria 41.2 0.0209   NR WP_330949910.1 1328 g12349 i0 48.6 0.460580912863071 37 19 46.1 0 237 127 11 47 WP_330949910.1 hypothetical protein, partial [Streptococcus anginosus] diamond 111 41.2 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus
30105387 30105387 PRJNA1262902_P_NODE_192_length_870_cov_2.789210_g162_i0 PRJNA1262902 192 870 2.78921 24.266127 Streptococcus anginosus 1328 Bacteria Bacteria 94.4 5.28e-18   NR WP_330942626.1 1328 g162 i0 62.1 0.227586206896552 66 25 22.8 0 846 649 307 372 WP_330942626.1 hypothetical protein [Streptococcus anginosus] diamond 198 94.4 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus
30281711 30281711 PRJNA1262902_P_NODE_9272_length_247_cov_0.885057_g9230_i0 PRJNA1262902 9272 247 0.885057 2.18609079 Paenibacillus 44249 Bacteria Bacteria 90.5 6.22e-19   NR WP_313639702.1 58172 g9230 i0 49.4 3.82591093117409 79 40 96 0 11 247 855 933 WP_313639702.1 Ig-like domain-containing protein, partial [Paenibacillus sp.] diamond 945 90.9 0.995599559955996 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;