RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1255065" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1255065 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27516194 27516194 PRJNA1255065_P_NODE_7263_length_1063_cov_49.628205_g5990_i1 PRJNA1255065 7263 1063 49.628205 527.54781915 Mycoplasmopsis anatis 171279 Bacteria Bacteria 115 3.72e-27   NR MBW0597145.1 171279 g5990 i1 68 0.640639698965193 97 31 27.4 0 550 840 62 158 MBW0597145.1 hypothetical protein [Mycoplasmopsis anatis] diamond 681 115 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis anatis
29189764 29189764 PRJNA1255065_P_NODE_121729_length_167_cov_0.813559_g119501_i0 PRJNA1255065 121729 167 0.813559 1.35864353 Mycoplasmopsis arginini 2094 Bacteria Bacteria 45.8 2e-4   NR MDI3350086.1 2094 g119501 i0 76 0.449101796407186 25 6 44.9 0 164 90 71 95 MDI3350086.1 hypothetical protein [Mycoplasmopsis arginini] diamond 75 45.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
30737180 30737180 PRJNA1255065_P_NODE_122654_length_166_cov_1.247863_g120426_i0 PRJNA1255065 122654 166 1.247863 2.07145258 Mycoplasmopsis arginini 2094 Bacteria Bacteria 45.4 0.00122   NR MDI3350303.1 2094 g120426 i0 85.7 0.379518072289157 21 3 38 0 88 26 4 24 MDI3350303.1 hypothetical protein [Mycoplasmopsis arginini] diamond 63 45.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
31685541 31685541 PRJNA1255065_P_NODE_128117_length_165_cov_1.793103_g125889_i0 PRJNA1255065 128117 165 1.793103 2.95861995 Mycoplasmopsis arginini 2094 Bacteria Bacteria 40.4 0.0246   NR MDI3350086.1 2094 g125889 i0 72.7 0.4 22 6 40 0 3 68 74 95 MDI3350086.1 hypothetical protein [Mycoplasmopsis arginini] diamond 66 40.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;