RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1255065" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1255065 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29018375 29018375 PRJNA1255065_P_NODE_137628_length_164_cov_0.904348_g135400_i0 PRJNA1255065 137628 164 0.904348 1.48313072 Fimbriimonas 1005038 Bacteria Bacteria 80.9 7.82e-17   NR WP_025227160.1 1005039 g135400 i0 67.3 6.67682926829268 52 17 95.1 0 2 157 165 216 WP_025227160.1 class I SAM-dependent methyltransferase [Fimbriimonas ginsengisoli] diamond 1095 81.3 0.995079950799508 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
29221371 29221371 PRJNA1255065_P_NODE_137689_length_164_cov_0.904348_g135461_i0 PRJNA1255065 137689 164 0.904348 1.48313072 Armatimonadota bacterium 2033014 Bacteria Bacteria 105 1.1e-25   NR RMG25236.1 2033014 g135461 i0 96.3 0.98780487804878 54 2 98.8 0 2 163 228 281 RMG25236.1 MAG: hypothetical protein D6724_04555 [Armatimonadota bacterium] diamond 162 105 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30990243 30990243 PRJNA1255065_P_NODE_88194_length_188_cov_2.215827_g85966_i0 PRJNA1255065 88194 188 2.215827 4.16575476 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 54.7 1.08e-6   NR MBX7134173.1 2682144 g85966 i0 37.7 0.973404255319149 61 38 97.3 0 4 186 219 279 MBX7134173.1 DUF4403 family protein [Fimbriimonadaceae bacterium] diamond 183 54.7 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;