RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1255065" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 8 ✖

bioproject 1

  • PRJNA1255065 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26978852 26978852 PRJNA1255065_P_NODE_144282_length_163_cov_0.912281_g142054_i0 PRJNA1255065 144282 163 0.912281 1.48701803 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 51.2 1.23e-5   NR XP_002677098.1 5762 g142054 i0 56 0.920245398773006 50 22 92 0 12 161 178 227 XP_002677098.1 uncharacterized protein NAEGRDRAFT_79755 [Naegleria gruberi] diamond 150 51.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27642704 27642704 PRJNA1255065_P_NODE_79764_length_201_cov_1.263158_g77536_i0 PRJNA1255065 79764 201 1.263158 2.53894758 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 132 4.01e-38   NR NP_066535.1 5762 g77536 i0 100 0.985074626865672 66 0 98.5 0 2 199 50 115 NP_066535.1 NADH dehydrogenase subunit 3 [Naegleria gruberi] diamond 198 132 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27989900 27989900 PRJNA1255065_P_NODE_116385_length_167_cov_1.322034_g114157_i0 PRJNA1255065 116385 167 1.322034 2.20779678 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 50.1 3.43e-5   NR XP_002679748.1 5762 g114157 i0 93.5 0.55688622754491 31 0 53.9 2 27 116 4 33 XP_002679748.1 uncharacterized protein NAEGRDRAFT_78974 [Naegleria gruberi] diamond 93 50.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28400259 28400259 PRJNA1255065_P_NODE_118766_length_167_cov_0.881356_g116538_i0 PRJNA1255065 118766 167 0.881356 1.47186452 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 95.9 1.73e-21   NR XP_002672123.1 5762 g116538 i0 90.9 0.988023952095808 55 4 98.8 1 2 166 2 55 XP_002672123.1 uncharacterized protein NAEGRDRAFT_81293 [Naegleria gruberi] diamond 165 95.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30516134 30516134 PRJNA1255065_P_NODE_145753_length_163_cov_0.912281_g143525_i0 PRJNA1255065 145753 163 0.912281 1.48701803 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 55.8 3e-7   NR XP_002674122.1 5762 g143525 i0 82.9 0.644171779141104 35 4 60.7 1 99 1 12 46 XP_002674122.1 PLDc domain-containing protein [Naegleria gruberi] diamond 105 55.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30737181 30737181 PRJNA1255065_P_NODE_122934_length_166_cov_0.888889_g120706_i0 PRJNA1255065 122934 166 0.888889 1.47555574 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 86.3 1.86e-18   NR XP_002668850.1 5762 g120706 i0 89.1 0.831325301204819 46 5 83.1 0 140 3 1 46 XP_002668850.1 uncharacterized protein NAEGRDRAFT_76225 [Naegleria gruberi] diamond 138 86.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31559381 31559381 PRJNA1255065_P_NODE_124576_length_166_cov_0.888889_g122348_i0 PRJNA1255065 124576 166 0.888889 1.47555574 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 101 4.23e-25   NR XP_002677076.1 5762 g122348 i0 87.3 0.993975903614458 55 7 99.4 0 1 165 72 126 XP_002677076.1 uncharacterized protein NAEGRDRAFT_79728 [Naegleria gruberi] diamond 165 101 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32886247 32886247 PRJNA1255065_P_NODE_153520_length_162_cov_0.911504_g151292_i0 PRJNA1255065 153520 162 0.911504 1.47663648 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 65.9 6.05e-11   NR XP_002672629.1 5762 g151292 i0 78.4 0.944444444444444 51 11 94.4 0 155 3 59 109 XP_002672629.1 uncharacterized protein NAEGRDRAFT_59183 [Naegleria gruberi] diamond 153 65.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;