RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1253698" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 2 ✖

bioproject 1

  • PRJNA1253698 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26661981 26661981 PRJNA1253698_S_NODE_5021_length_309_cov_1.661538_g4655_i0 PRJNA1253698 5021 309 1.661538 5.13415242 Sulfurisphaera javensis 2049879 Archaea Archaea 121 6.35e-34   NR WP_369609289.1 2049879 g4655 i0 98.4 0.592233009708738 61 1 59.2 0 254 72 2 62 WP_369609289.1 Sul7d family chromatin protein [Sulfurisphaera javensis] diamond 183 121 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfurisphaera Sulfurisphaera javensis
27390063 27390063 PRJNA1253698_S_NODE_19283_length_167_cov_0.881356_g18917_i0 PRJNA1253698 19283 167 0.881356 1.47186452 Methanobacteriota archaeon 2026739 Archaea Archaea 110 3.0899999999999998e-28   NR MCH7660394.1 2026739 g18917 i0 100 0.970059880239521 54 0 97 0 5 166 1 54 MCH7660394.1 ethanolamine ammonia-lyase subunit EutC [Methanobacteriota archaeon] diamond 162 110 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;