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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1253698" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1253698 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28968658 28968658 PRJNA1253698_S_NODE_22488_length_163_cov_0.912281_g22122_i0 PRJNA1253698 22488 163 0.912281 1.48701803 Bacteroidales bacterium 2030927 Bacteria Bacteria 109 4.49e-26   NR MCF8308263.1 2030927 g22122 i0 100 1.95092024539877 53 0 97.5 0 160 2 243 295 MCF8308263.1 T9SS type A sorting domain-containing protein [Bacteroidales bacterium] diamond 318 109 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
29491587 29491587 PRJNA1253698_S_NODE_20010_length_166_cov_0.888889_g19644_i0 PRJNA1253698 20010 166 0.888889 1.47555574 Spirosoma 107 Bacteria Bacteria 111 9.91e-27   NR WP_162385456.1 2666025 g19644 i0 88.9 9.75903614457831 54 6 97.6 0 4 165 1017 1070 WP_162385456.1 carbohydrate-binding protein [Spirosoma endbachense] diamond 1620 112 0.991071428571429 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma endbachense
29916029 29916029 PRJNA1253698_S_NODE_21711_length_164_cov_0.904348_g21345_i0 PRJNA1253698 21711 164 0.904348 1.48313072 Prevotella sp. 59823 Bacteria Bacteria 99 2.26e-23   NR MBO4659852.1 59823 g21345 i0 85.2 19.7560975609756 54 8 98.8 0 3 164 79 132 MBO4659852.1 RluA family pseudouridine synthase [Prevotella sp.] diamond 3240 99 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp.
30642374 30642374 PRJNA1253698_S_NODE_20333_length_166_cov_0.888889_g19967_i0 PRJNA1253698 20333 166 0.888889 1.47555574 Bacteroidota bacterium 1898104 Bacteria Bacteria 111 2.8300000000000004e-27   NR MEO0066638.1 1898104 g19967 i0 100 0.957831325301205 53 0 95.8 0 4 162 286 338 MEO0066638.1 hypothetical protein [Bacteroidota bacterium] diamond 159 111 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
31418864 31418864 PRJNA1253698_S_NODE_21716_length_164_cov_0.904348_g21350_i0 PRJNA1253698 21716 164 0.904348 1.48313072 Pontibacter 323449 Bacteria Bacteria 87 2.16e-18   NR WP_199110152.1 323449 g21350 i0 73.6 9.69512195121951 53 14 97 0 1 159 98 150 WP_199110152.1 MULTISPECIES: multidrug effflux MFS transporter [Pontibacter] diamond 1590 87.8 0.990888382687927 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter  
31938601 31938601 PRJNA1253698_S_NODE_20777_length_165_cov_0.896552_g20411_i0 PRJNA1253698 20777 165 0.896552 1.4793108 Bacteroidales bacterium 2030927 Bacteria Bacteria 102 1.2799999999999999e-23   NR MCF8232212.1 2030927 g20411 i0 94.3 1.94545454545455 53 3 96.4 0 7 165 16 68 MCF8232212.1 DUF5723 family protein [Bacteroidales bacterium] diamond 321 102 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
32760445 32760445 PRJNA1253698_S_NODE_21620_length_164_cov_0.904348_g21254_i0 PRJNA1253698 21620 164 0.904348 1.48313072 Hymenobacter cyanobacteriorum 2926463 Bacteria Bacteria 79.7 1.04e-15   NR WP_241935619.1 2926463 g21254 i0 76.9 1.9390243902439 52 12 95.1 0 3 158 122 173 WP_241935619.1 sensor histidine kinase [Hymenobacter cyanobacteriorum] diamond 318 79.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter cyanobacteriorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;