RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1253303" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJNA1253303 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27674233 27674233 PRJNA1253303_P_NODE_7624_length_245_cov_0.906977_g7602_i0 PRJNA1253303 7624 245 0.906977 2.22209365 Candidatus Thalassarchaeaceae archaeon 2670411 Archaea Archaea 134 4.26e-36   NR MFL2971360.1 2670411 g7602 i0 88.9 2.97551020408163 81 9 99.2 0 1 243 208 288 MFL2971360.1 rhomboid family intramembrane serine protease [Candidatus Thalassarchaeaceae archaeon] diamond 729 134 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Thalassarchaeaceae   Candidatus Thalassarchaeaceae archaeon
29158209 29158209 PRJNA1253303_P_NODE_7749_length_244_cov_0.912281_g7727_i0 PRJNA1253303 7749 244 0.912281 2.22596564 Thermoproteota archaeon 2056631 Archaea Archaea 83.6 1.13e-16   NR MDP8886176.1 2056631 g7727 i0 91.8 0.602459016393443 49 4 60.2 0 147 1 1 49 MDP8886176.1 cobalt-precorrin-5B (C(1))-methyltransferase [Thermoproteota archaeon] diamond 147 83.6 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
29852736 29852736 PRJNA1253303_P_NODE_6071_length_250_cov_0.881356_g6049_i0 PRJNA1253303 6071 250 0.881356 2.20339 Nitrososphaera sp. 1971748 Archaea Archaea 91.3 9.74e-22   NR HEX2170552.1 1971748 g6049 i0 81.3 0.768 64 12 76.8 0 57 248 1 64 HEX2170552.1 hypothetical protein [Nitrososphaera sp.] diamond 192 91.3 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
31748812 31748812 PRJNA1253303_P_NODE_4997_length_253_cov_0.866667_g4975_i0 PRJNA1253303 4997 253 0.866667 2.19266751 Thermoproteota archaeon 2056631 Archaea Archaea 43.9 0.0168   NR RLG52514.1 2056631 g4975 i0 33.3 0.782608695652174 66 44 78.3 0 244 47 376 441 RLG52514.1 MAG: disulfide reductase [Thermoproteota archaeon] diamond 198 43.9 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;