RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1253303" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1253303 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26693876 26693876 PRJNA1253303_P_NODE_3521_length_292_cov_1.068493_g3499_i0 PRJNA1253303 3521 292 1.068493 3.11999956 Ranitomeya imitator 111125 Chordata Chordata 70.1 1.45e-11   NR CAJ0964204.1 111125 g3499 i0 73 1.15068493150685 37 10 38 0 150 40 15 51 CAJ0964204.1 unnamed protein product [Ranitomeya imitator] diamond 336 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
28102248 28102248 PRJNA1253303_P_NODE_8365_length_242_cov_0.923077_g8343_i0 PRJNA1253303 8365 242 0.923077 2.23384634 Opisthokonta 33154 Chordata Chordata 82.8 2.9e-16   NR XP_035693743.1 7739 g8343 i0 44.7 22.0165289256198 76 42 94.2 0 13 240 15 90 XP_035693743.1 vacuolar protein sorting-associated protein 16 homolog [Branchiostoma floridae] diamond 5328 82.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28702436 28702436 PRJNA1253303_P_NODE_8307_length_242_cov_0.923077_g8285_i0 PRJNA1253303 8307 242 0.923077 2.23384634 Opisthokonta 33154 Chordata Chordata 66.6 8.28e-11   NR XP_032800718.1 7757 g8285 i0 48.4 6.03719008264463 64 33 79.3 0 217 26 208 271 XP_032800718.1 GPN-loop GTPase 3 [Petromyzon marinus] diamond 1461 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
31812227 31812227 PRJNA1253303_P_NODE_6197_length_249_cov_0.886364_g6175_i0 PRJNA1253303 6197 249 0.886364 2.20704636 Mus musculus 10090 Chordata Chordata 50.1 2.14e-5   NR EDL38123.1 10090 g6175 i0 67.6 2.06024096385542 34 11 41 0 140 241 21 54 EDL38123.1 mCG50936, partial [Mus musculus] diamond 513 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;