RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1253303" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1253303 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28052864 28052864 PRJNA1253303_P_NODE_6885_length_247_cov_0.896552_g6863_i0 PRJNA1253303 6885 247 0.896552 2.21448344 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 153 2.470000000000001e-44   NR HEX7175471.1 2283092 g6863 i0 90.2 0.995951417004049 82 8 99.6 0 246 1 114 195 HEX7175471.1 arginine deiminase family protein [Pyrinomonadaceae bacterium] diamond 246 153 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28716086 28716086 PRJNA1253303_P_NODE_8087_length_243_cov_0.917647_g8065_i0 PRJNA1253303 8087 243 0.917647 2.22988221 Acidobacteriota bacterium 1978231 Bacteria Bacteria 71.2 1.72e-12   NR MCC6992530.1 1978231 g8065 i0 54 0.777777777777778 63 29 77.8 0 242 54 226 288 MCC6992530.1 CpsD/CapB family tyrosine-protein kinase [Acidobacteriota bacterium] diamond 189 71.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28891550 28891550 PRJNA1253303_P_NODE_7328_length_246_cov_0.901734_g7306_i0 PRJNA1253303 7328 246 0.901734 2.21826564 Bacteria 2 Bacteria Bacteria 156 2.57e-45   NR MCA1631309.1 1978231 g7306 i0 96.3 76.0609756097561 81 3 98.8 0 2 244 137 217 MCA1631309.1 signal recognition particle-docking protein FtsY [Acidobacteriota bacterium] diamond 18711 157 0.993630573248408 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29473486 29473486 PRJNA1253303_P_NODE_8190_length_243_cov_0.917647_g8168_i0 PRJNA1253303 8190 243 0.917647 2.22988221 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 154 2.2e-43   NR HYO79772.1 2212468 g8168 i0 92.5 0.987654320987654 80 6 98.8 0 241 2 288 367 HYO79772.1 ATP-binding protein [Bryobacteraceae bacterium] diamond 240 154 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29662835 29662835 PRJNA1253303_P_NODE_5770_length_251_cov_0.876404_g5748_i0 PRJNA1253303 5770 251 0.876404 2.19977404 Acidobacteriota bacterium 1978231 Bacteria Bacteria 123 1.92e-33   NR MBA2304462.1 1978231 g5748 i0 72.3 0.99203187250996006 83 23 99.2 0 2 250 12 94 MBA2304462.1 hypothetical protein [Acidobacteriota bacterium] diamond 249 123 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30516125 30516125 PRJNA1253303_P_NODE_8513_length_242_cov_0.923077_g8491_i0 PRJNA1253303 8513 242 0.923077 2.23384634 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 109 2.02e-26   NR HYU80745.1 2910147 g8491 i0 68.4 1.95867768595041 79 25 97.9 0 6 242 168 246 HYU80745.1 serine hydrolase domain-containing protein [Vicinamibacterales bacterium] diamond 474 109 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;