RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1253303" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA1253303 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18211119 18211119 PRJNA1253303_P_NODE_2355_length_341_cov_0.873134_g2333_i0 PRJNA1253303 2355 341 0.873134 2.97738694 Murine astrovirus 2 2171380 Viruses Viruses 217 8.46e-64   NR QFP20151.1 2171380 g2333 i0 86.7 0.994134897360704 113 15 99.4 0 3 341 492 604 QFP20151.1 capsid protein [Murine astrovirus 2] diamond 339 217 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Murine astrovirus 2
28052863 28052863 PRJNA1253303_P_NODE_6645_length_248_cov_0.891429_g6623_i0 PRJNA1253303 6645 248 0.891429 2.21074392 Carya illinoinensis carlavirus 1 2794420 Viruses Viruses 124 5.959999999999999e-31   NR QQG34672.1 2794420 g6623 i0 74.4 0.991935483870968 82 21 99.2 0 246 1 893 974 QQG34672.1 RdRp [Carya illinoinensis carlavirus 1] diamond 246 124 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carya illinoinensis carlavirus 1
32665913 32665913 PRJNA1253303_P_NODE_6720_length_247_cov_1.574713_g6698_i0 PRJNA1253303 6720 247 1.574713 3.88954111 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 65.5 4e-10   NR XCM67999.1 3003959 g6698 i0 45.3 0.910931174089069 75 37 91.1 1 246 22 2364 2434 XCM67999.1 MAG: polyprotein [Picornavirales sp.] diamond 225 65.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;