RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1253303" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA1253303 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4186587 4186587 PRJNA1253303_P_NODE_5904_length_250_cov_0.881356_g5882_i0 PRJNA1253303 5904 250 0.881356 2.20339 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 110 1.35e-27   NR XP_003291514.1 5786 g5882 i0 58.5 4.884 82 34 98.4 0 3 248 3 84 XP_003291514.1 40S ribosomal protein SA [Dictyostelium purpureum] diamond 1221 111 0.990990990990991 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27231808 27231808 PRJNA1253303_P_NODE_7163_length_246_cov_0.901734_g7141_i0 PRJNA1253303 7163 246 0.901734 2.21826564 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 81.3 1.07e-15   NR KAH3765355.1 1580589 g7141 i0 66.2 0.792682926829268 65 22 79.3 0 51 245 1323 1387 KAH3765355.1 Pre-mRNA-splicing factor CLF1 [Pelomyxa schiedti] diamond 195 81.3 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
30059957 30059957 PRJNA1253303_P_NODE_5051_length_253_cov_0.866667_g5029_i0 PRJNA1253303 5051 253 0.866667 2.19266751 root 1 Root_unresolved Root_unresolved 126 1.82e-31   NR XP_003292154.1 5786 g5029 i0 71.3 50.7509881422925 87 22 99.6 1 1 252 480 566 XP_003292154.1 major vault protein-alpha [Dictyostelium purpureum] diamond 12840 127 0.992125984251969 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
30421729 30421729 PRJNA1253303_P_NODE_7073_length_246_cov_0.901734_g7051_i0 PRJNA1253303 7073 246 0.901734 2.21826564 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 60.5 2.18e-8   NR XP_004333943.1 1257118 g7051 i0 39.4 0.804878048780488 66 38 80.5 2 242 45 411 474 XP_004333943.1 Lecithin:cholesterol acyltransferase [Acanthamoeba castellanii str. Neff] diamond 198 60.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30579093 30579093 PRJNA1253303_P_NODE_6673_length_248_cov_0.891429_g6651_i0 PRJNA1253303 6673 248 0.891429 2.21074392 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.1 5.65e-19   NR XP_004335476.1 1257118 g6651 i0 59.2 0.919354838709677 76 31 91.9 0 242 15 30 105 XP_004335476.1 uncharacterized protein ACA1_245660 [Acanthamoeba castellanii str. Neff] diamond 228 90.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32413461 32413461 PRJNA1253303_P_NODE_4379_length_266_cov_1.409326_g4357_i0 PRJNA1253303 4379 266 1.409326 3.74880716 Dictyostelium purpureum 5786 Evosea other_Eukaryota 53.9 5.48e-6   NR XP_003291783.1 5786 g4357 i0 39.7 1.57894736842105 73 35 73.3 2 233 39 123 194 XP_003291783.1 uncharacterized protein DICPUDRAFT_156425 [Dictyostelium purpureum] diamond 420 53.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
32476796 32476796 PRJNA1253303_P_NODE_6859_length_247_cov_0.896552_g6837_i0 PRJNA1253303 6859 247 0.896552 2.21448344 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 51.2 4.12e-5   NR PRP77191.1 1890364 g6837 i0 32.9 0.995951417004049 82 55 99.6 0 246 1 333 414 PRP77191.1 hypothetical protein PROFUN_13377 [Planoprotostelium fungivorum] diamond 246 51.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32634237 32634237 PRJNA1253303_P_NODE_3080_length_308_cov_1.259574_g3058_i0 PRJNA1253303 3080 308 1.259574 3.87948792 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 113 2.63e-30   NR XP_004335921.1 1257118 g3058 i0 59.6 0.915584415584416 94 37 91.6 1 25 306 4 96 XP_004335921.1 uncharacterized protein ACA1_364340 [Acanthamoeba castellanii str. Neff] diamond 282 113 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32886225 32886225 PRJNA1253303_P_NODE_6640_length_248_cov_0.891429_g6618_i0 PRJNA1253303 6640 248 0.891429 2.21074392 Cavenderia fasciculata 261658 Evosea other_Eukaryota 112 1.18e-26   NR XP_004356903.1 261658 g6618 i0 63.4 2.9758064516129 82 30 99.2 0 247 2 181 262 XP_004356903.1 glycyl-tRNA synthetase [Cavenderia fasciculata] diamond 738 112 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;