RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1249535" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1249535 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26725085 26725085 PRJNA1249535_S_NODE_172021_length_322_cov_1.566265_g168638_i0 PRJNA1249535 172021 322 1.566265 5.0433733 Ignavibacteria bacterium 2053306 Bacteria Bacteria 60.8 1.54e-8   NR KAF0139660.1 2053306 g168638 i0 35.8 5.87888198757764 109 61 97.8 4 5 319 43 146 KAF0139660.1 MAG: hypothetical protein FD143_3553 [Ignavibacteria bacterium] diamond 1893 60.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
29505217 29505217 PRJNA1249535_S_NODE_84190_length_395_cov_2.009317_g80808_i0 PRJNA1249535 84190 395 2.009317 7.93680215 Ignavibacterium sp. 2651167 Bacteria Bacteria 44.3 0.0335   NR WP_297837130.1 2651167 g80808 i0 40 0.493670886075949 65 30 43.3 2 362 192 122 185 WP_297837130.1 class I SAM-dependent methyltransferase [Ignavibacterium sp.] diamond 195 44.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
30327065 30327065 PRJNA1249535_S_NODE_87432_length_390_cov_3.738170_g84050_i0 PRJNA1249535 87432 390 3.73817 14.578863 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 47 0.00309   NR MFH1204673.1 2026749 g84050 i0 36.1 1.10769230769231 72 40 50.8 1 240 43 6 77 MFH1204673.1 hypothetical protein [Ignavibacteriota bacterium] diamond 432 47 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;