RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1249535" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1249535 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28052819 28052819 PRJNA1249535_S_NODE_304725_length_250_cov_2.598870_g301342_i0 PRJNA1249535 304725 250 2.59887 6.497175 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 45.4 0.00466   NR MEO7456869.1 2026741 g301342 i0 41.9 0.744 62 36 74.4 0 213 28 589 650 MEO7456869.1 protein kinase [Gemmatimonadaceae bacterium] diamond 186 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29473365 29473365 PRJNA1249535_S_NODE_181590_length_316_cov_4.172840_g178207_i0 PRJNA1249535 181590 316 4.17284 13.1861744 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.7 0.00134   NR MDP3773548.1 2448054 g178207 i0 41.7 0.455696202531646 48 26 43.7 1 134 271 2 49 MDP3773548.1 hypothetical protein [Gemmatimonadales bacterium] diamond 144 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31084795 31084795 PRJNA1249535_S_NODE_229115_length_291_cov_2.316514_g225732_i0 PRJNA1249535 229115 291 2.316514 6.74105574 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.1 0.00976   NR MBM4183634.1 2026742 g225732 i0 44.4 0.463917525773196 45 25 46.4 0 221 87 283 327 MBM4183634.1 MFS transporter [Gemmatimonadota bacterium] diamond 135 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31210657 31210657 PRJNA1249535_S_NODE_218835_length_296_cov_3.529148_g215452_i0 PRJNA1249535 218835 296 3.529148 10.44627808 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.5 0.0355   NR MEA2725146.1 2448054 g215452 i0 39 0.597972972972973 59 29 52.7 1 228 73 81 139 MEA2725146.1 hypothetical protein [Gemmatimonadales bacterium] diamond 177 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;