RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1249535" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA1249535 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27376492 27376492 PRJNA1249535_S_NODE_332083_length_232_cov_3.100629_g328700_i0 PRJNA1249535 332083 232 3.100629 7.19345928 Haloferax 2251 Archaea Archaea 42.4 0.0447   NR WP_004970558.1 35745 g328700 i0 33.3 2.68965517241379 69 32 71.1 1 168 4 242 310 WP_004970558.1 L-lactate permease [Haloferax denitrificans] diamond 624 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax denitrificans
30105247 30105247 PRJNA1249535_S_NODE_290932_length_257_cov_11.391304_g287549_i0 PRJNA1249535 290932 257 11.391304 29.27565128 Halobacteriales archaeon SW_9_67_25 1919210 Archaea Archaea 41.2 0.0251   NR PSQ59589.1 1919210 g287549 i0 30.9 0.642023346303502 55 38 64.2 0 239 75 7 61 PSQ59589.1 MAG: hypothetical protein BRD23_04035 [Halobacteriales archaeon SW_9_67_25] diamond 165 41.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon SW_9_67_25
32413452 32413452 PRJNA1249535_S_NODE_76179_length_408_cov_2.322388_g72798_i0 PRJNA1249535 76179 408 2.322388 9.47534304 uncultured Methanomethylovorans sp. 183759 Archaea Archaea 45.8 0.0169   NR WP_321416730.1 183759 g72798 i0 36.4 0.485294117647059 66 38 45.6 1 31 216 371 436 WP_321416730.1 RNA-guided endonuclease InsQ/TnpB family protein [uncultured Methanomethylovorans sp.] diamond 198 45.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanomethylovorans uncultured Methanomethylovorans sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;