RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1249535" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA1249535 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28115872 28115872 PRJNA1249535_S_NODE_211005_length_300_cov_4.207048_g207622_i0 PRJNA1249535 211005 300 4.207048 12.621144 Methanobrevibacter boviskoreani 1348249 Archaea Archaea 143 1.43e-38   NR WP_274952164.1 1348249 g207622 i0 71 1 100 29 100 0 1 300 60 159 WP_274952164.1 ATP-binding protein [Methanobrevibacter boviskoreani] diamond 300 143 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter boviskoreani
30421634 30421634 PRJNA1249535_S_NODE_168653_length_324_cov_1.322709_g165270_i0 PRJNA1249535 168653 324 1.322709 4.28557716 Methanosphaera sp. 2666342 Archaea Archaea 43.5 0.0466   NR MBQ6220651.1 2666342 g165270 i0 38.6 0.527777777777778 57 34 51.9 1 268 101 259 315 MBQ6220651.1 transposase [Methanosphaera sp.] diamond 171 43.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
30628608 30628608 PRJNA1249535_S_NODE_281433_length_263_cov_1.942105_g278050_i0 PRJNA1249535 281433 263 1.942105 5.10773615 Methanobacterium 2160 Archaea Archaea 43.9 0.0134   NR MBI4812854.1 2164 g278050 i0 26.2 2.08745247148289 61 44 68.4 1 21 200 81 141 MBI4812854.1 preprotein translocase subunit SecD [Methanobacterium sp.] diamond 549 43.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;