RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1249535" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1249535 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29662723 29662723 PRJNA1249535_S_NODE_203110_length_304_cov_5.701299_g199727_i0 PRJNA1249535 203110 304 5.701299 17.33194896 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 58.9 9.72e-8   NR KAJ9435998.1 91374 g199727 i0 42.2 1.63815789473684 83 45 81.9 3 2 250 167 246 KAJ9435998.1 hypothetical protein DIPPA_34462 [Diplonema papillatum] diamond 498 58.9 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
30832008 30832008 PRJNA1249535_S_NODE_342954_length_210_cov_4.153285_g339571_i0 PRJNA1249535 342954 210 4.153285 8.7218985 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 41.6 0.0458   NR XP_029231586.1 83891 g339571 i0 37.3 0.842857142857143 59 36 84.3 1 30 206 31 88 XP_029231586.1 uncharacterized protein Tco025E_01241 [Trypanosoma conorhini] diamond 177 41.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
31496046 31496046 PRJNA1249535_S_NODE_296256_length_255_cov_1.285714_g292873_i0 PRJNA1249535 296256 255 1.285714 3.2785707 Phytomonas sp. EM1 479712 Euglenozoa other_Eukaryota 44.3 0.0126   NR CCW60050.1 479712 g292873 i0 33.8 0.905882352941176 77 49 90.6 1 23 253 1173 1247 CCW60050.1 unnamed protein product [Phytomonas sp. EM1] diamond 231 44.3 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. EM1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;