RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1249042" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249042 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29410366 29410366 PRJNA1249042_S_NODE_47549_length_213_cov_2.358824_g47335_i0 PRJNA1249042 47549 213 2.358824 5.02429512 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.7 0.0249   NR MCE9645369.1 2026724 g47335 i0 44.4 0.507042253521127 36 20 50.7 0 32 139 351 386 MCE9645369.1 M1 family metallopeptidase [Chloroflexota bacterium] diamond 108 42.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29694275 29694275 PRJNA1249042_S_NODE_16830_length_275_cov_1.418103_g16616_i0 PRJNA1249042 16830 275 1.418103 3.89978325 Anaerolineales bacterium 2073117 Bacteria Bacteria 43.5 0.0298   NR MCC6191996.1 2073117 g16616 i0 50 0.610909090909091 56 26 60 2 170 6 727 781 MCC6191996.1 GAF domain-containing protein [Anaerolineales bacterium] diamond 168 43.5 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31053391 31053391 PRJNA1249042_S_NODE_106815_length_156_cov_2.955752_g106601_i0 PRJNA1249042 106815 156 2.955752 4.61097312 Chloroflexota bacterium 2026724 Bacteria Bacteria 41.2 0.0401   NR NLG28053.1 2026724 g106601 i0 41.5 0.788461538461538 41 24 78.8 0 130 8 297 337 NLG28053.1 DNRLRE domain-containing protein [Chloroflexota bacterium] diamond 123 41.2 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32413329 32413329 PRJNA1249042_S_NODE_105539_length_157_cov_2.473684_g105325_i0 PRJNA1249042 105539 157 2.473684 3.88368388 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 80.9 2.89e-16   NR MBX7112445.1 2026734 g105325 i0 73.9 0.878980891719745 46 12 87.9 0 3 140 64 109 MBX7112445.1 MaoC family dehydratase N-terminal domain-containing protein [Dehalococcoidia bacterium] diamond 138 80.9 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
32571628 32571628 PRJNA1249042_S_NODE_78759_length_179_cov_1.727941_g78545_i0 PRJNA1249042 78759 179 1.727941 3.09301439 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 59.7 6.7e-9   NR MDD5702901.1 2026733 g78545 i0 63 0.770949720670391 46 17 77.1 0 178 41 120 165 MDD5702901.1 DUF4125 family protein [Dehalococcoidales bacterium] diamond 138 59.7 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;