RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1249042" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249042 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27389900 27389900 PRJNA1249042_S_NODE_16063_length_277_cov_3.316239_g15849_i0 PRJNA1249042 16063 277 3.316239 9.18598203 Armatimonadota bacterium 2033014 Bacteria Bacteria 47.4 0.00134   NR MBI2843060.1 2033014 g15849 i0 46.5 0.465703971119134 43 23 46.6 0 177 49 605 647 MBI2843060.1 molybdopterin-dependent oxidoreductase [Armatimonadota bacterium] diamond 129 47.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30547575 30547575 PRJNA1249042_S_NODE_32113_length_237_cov_2.438144_g31899_i0 PRJNA1249042 32113 237 2.438144 5.77840128 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 40.8 0.0265   NR HZP82414.1 2739509 g31899 i0 37.7 0.670886075949367 53 32 65.8 1 15 170 5 57 HZP82414.1 hypothetical protein [Chthonomonadaceae bacterium] diamond 159 40.8 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
30863463 30863463 PRJNA1249042_S_NODE_28714_length_244_cov_1.890547_g28500_i0 PRJNA1249042 28714 244 1.890547 4.61293468 Armatimonadota bacterium 2033014 Bacteria Bacteria 41.2 0.0306   NR RMG22688.1 2033014 g28500 i0 33.8 0.909836065573771 74 44 88.5 2 236 21 11 81 RMG22688.1 MAG: hypothetical protein D6724_09985 [Armatimonadota bacterium] diamond 222 41.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;