RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1249042" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1249042 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26743136 26743136 PRJNA1249042_S_NODE_105361_length_157_cov_3.149123_g105147_i0 PRJNA1249042 105361 157 3.149123 4.94412311 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 82.4 1.26e-18   NR XP_067803686.1 323732 g105147 i0 72.5 16.5668789808917 51 14 97.5 0 1 153 54 104 XP_067803686.1 bifunctional Ribosomal protein L31e domain superfamily/Ribosomal protein L31e [Babesia duncani] diamond 2601 82.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia duncani
26947015 26947015 PRJNA1249042_S_NODE_60982_length_197_cov_1.720779_g60768_i0 PRJNA1249042 60982 197 1.720779 3.38993463 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.00639   NR AIZ73304.1 5833 g60768 i0 50 1.21827411167513 40 20 60.9 0 122 3 82 121 AIZ73304.1 erythrocyte membrane protein 1, partial [Plasmodium falciparum] diamond 240 43.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;