RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1249042" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1249042 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28102230 28102230 PRJNA1249042_S_NODE_56505_length_202_cov_1.861635_g56291_i0 PRJNA1249042 56505 202 1.861635 3.7605027 Acidobacteriota 57723 Bacteria Bacteria 45.1 0.0034   NR WP_111730502.1 2211119 g56291 i0 42.1 1.73762376237624 57 32 84.7 1 183 13 710 765 WP_111730502.1 TonB-dependent receptor [Lujinxingia litoralis] diamond 351 45.4 0.993392070484582 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia litoralis
32602897 32602897 PRJNA1249042_S_NODE_37100_length_228_cov_4.324324_g36886_i0 PRJNA1249042 37100 228 4.324324 9.85945872 Deltaproteobacteria bacterium GWA2_45_12 1797805 Bacteria Bacteria 42.4 0.0392   NR OGP10982.1 1797805 g36886 i0 39.6 0.697368421052632 53 32 69.7 0 195 37 87 139 OGP10982.1 MAG: high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG [Deltaproteobacteria bacterium GWA2_45_12] diamond 159 42.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWA2_45_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;