RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1249042" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1249042 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26915444 26915444 PRJNA1249042_S_NODE_84362_length_174_cov_1.656489_g84148_i0 PRJNA1249042 84362 174 1.656489 2.88229086 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 42.4 0.00579   NR KAG9393015.1 201153 g84148 i0 74.1 2.18965517241379 27 7 46.6 0 169 89 48 74 KAG9393015.1 ribosomal protein LP2 [Carpediemonas membranifera] diamond 381 42.4 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
27105098 27105098 PRJNA1249042_S_NODE_86722_length_172_cov_1.627907_g86508_i0 PRJNA1249042 86722 172 1.627907 2.80000004 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 57.4 9.36e-9   NR KAJ4453711.1 342808 g86508 i0 50 0.976744186046512 56 27 97.7 1 170 3 28 82 KAJ4453711.1 putative 60S acidic ribosomal protein P1 [Paratrimastix pyriformis] diamond 168 57.4 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;