RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1248471" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1248471 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27407997 27407997 PRJNA1248471_S_NODE_21183_length_163_cov_0.868421_g21083_i0 PRJNA1248471 21183 163 0.868421 1.41552623 Elysia 71493 Mollusca Mollusca 43.9 0.00278   NR RUS68931.1 188477 g21083 i0 54.3 4.23312883435583 46 20 82.8 1 163 29 38 83 RUS68931.1 hypothetical protein EGW08_023307 [Elysia chlorotica] diamond 690 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Elysia Elysia chlorotica
28544637 28544637 PRJNA1248471_S_NODE_15387_length_178_cov_1.139535_g15287_i0 PRJNA1248471 15387 178 1.139535 2.0283723 Metazoa 33208 Mollusca Mollusca 43.1 0.00822   NR CAG5115218.1 100452 g15287 i0 80 3.43820224719101 20 4 33.7 0 105 46 74 93 CAG5115218.1 unnamed protein product, partial [Candidula unifasciata] diamond 612 43.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Geomitridae Candidula Candidula unifasciata
31464336 31464336 PRJNA1248471_S_NODE_18916_length_166_cov_1.589744_g18816_i0 PRJNA1248471 18916 166 1.589744 2.63897504 Dendropoma gregarium 169306 Mollusca Mollusca 52.4 4.23e-6   NR YP_003934264.1 169306 g18816 i0 76.5 1.8433734939759 34 8 61.4 0 104 3 179 212 YP_003934264.1 cytochrome c oxidase subunit III [Dendropoma gregarium] diamond 306 52.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Vermetidae Dendropoma Dendropoma gregarium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;