RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1248471" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248471 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30439414 30439414 PRJNA1248471_S_NODE_21253_length_163_cov_0.719298_g21153_i0 PRJNA1248471 21253 163 0.719298 1.17245574 root 1 Root_unresolved Root_unresolved 50.1 3.26e-5   NR QHG77598.1 1280 g21153 i0 50.8 14.9447852760736 61 23 99.4 1 163 2 134 194 QHG77598.1 hypothetical protein EAX85_13915 [Staphylococcus aureus] diamond 2436 50.1 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
32368220 32368220 PRJNA1248471_S_NODE_3079_length_300_cov_1.135458_g2979_i0 PRJNA1248471 3079 300 1.135458 3.406374 Bacteria 2 Bacteria Bacteria 44.3 0.00201   NR WP_309547482.1 1313 g2979 i0 80 0.51 25 5 25 0 163 237 37 61 WP_309547482.1 hypothetical protein, partial [Streptococcus pneumoniae] diamond 153 44.7 0.991051454138702 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae
32381625 32381625 PRJNA1248471_S_NODE_7039_length_227_cov_2.005618_g6939_i0 PRJNA1248471 7039 227 2.005618 4.55275286 Clostridia bacterium 2044939 Bacteria Bacteria 87 7.57e-18   NR NCC78976.1 2044939 g6939 i0 61.7 0.79295154185022 60 23 79.3 0 191 12 526 585 NCC78976.1 hypothetical protein [Clostridia bacterium] diamond 180 87 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
32809719 32809719 PRJNA1248471_S_NODE_17620_length_170_cov_0.760331_g17520_i0 PRJNA1248471 17620 170 0.760331 1.2925627 root 1 Root_unresolved Root_unresolved 59.3 5.52e-10   NR TAQ98585.1 1590 g17520 i0 73.5 1.72941176470588 34 9 60 0 54 155 1 34 TAQ98585.1 hypothetical protein BV221_15430 [Lactiplantibacillus plantarum] diamond 294 59.3 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;