RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1248471" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1248471 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28652702 28652702 PRJNA1248471_S_NODE_9487_length_206_cov_0.834395_g9387_i0 PRJNA1248471 9487 206 0.834395 1.7188537 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 70.5 2.45e-13   NR SBT58227.1 864142 g9387 i0 78.9 0.553398058252427 38 8 55.3 0 127 14 14 51 SBT58227.1 hypothetical protein POVWA1_086370 [Plasmodium ovale wallikeri] diamond 114 70.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
29852563 29852563 PRJNA1248471_S_NODE_10171_length_203_cov_0.818182_g10071_i0 PRJNA1248471 10171 203 0.818182 1.66090946 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 60.8 1.31e-9   NR SBT58227.1 864142 g10071 i0 76.5 1.50738916256158 34 8 50.2 0 51 152 30 63 SBT58227.1 hypothetical protein POVWA1_086370 [Plasmodium ovale wallikeri] diamond 306 60.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
32634062 32634062 PRJNA1248471_S_NODE_8740_length_210_cov_1.254658_g8640_i0 PRJNA1248471 8740 210 1.254658 2.6347818 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 59.7 4.13e-9   NR SBT58227.1 864142 g8640 i0 80.6 0.442857142857143 31 6 44.3 0 118 210 12 42 SBT58227.1 hypothetical protein POVWA1_086370 [Plasmodium ovale wallikeri] diamond 93 59.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;