RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1248471" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248471 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6731296 6731296 PRJNA1248471_S_NODE_12426_length_193_cov_1.062500_g12326_i0 PRJNA1248471 12426 193 1.0625 2.050625 Arthrobacter russicus 172040 Bacteria Bacteria 134 2.22e-36   NR WP_309796647.1 172040 g12326 i0 100 0.994818652849741 64 0 99.5 0 192 1 159 222 WP_309796647.1 ABC transporter substrate-binding protein [Arthrobacter russicus] diamond 192 134 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter russicus
27263361 27263361 PRJNA1248471_S_NODE_5603_length_244_cov_1.641026_g5503_i0 PRJNA1248471 5603 244 1.641026 4.00410344 Nocardia vinacea 96468 Bacteria Bacteria 42.4 0.0499   NR WP_357481875.1 96468 g5503 i0 48.7 0.479508196721311 39 19 48 1 211 95 8 45 WP_357481875.1 hypothetical protein [Nocardia vinacea] diamond 117 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia vinacea
28986716 28986716 PRJNA1248471_S_NODE_22408_length_161_cov_1.500000_g22308_i0 PRJNA1248471 22408 161 1.5 2.415 Corynebacterium 1716 Bacteria Bacteria 58.9 1.27e-8   NR WP_015453155.1 1721 g22308 i0 59.2 1.82608695652174 49 20 91.3 0 3 149 62 110 WP_015453155.1 hypothetical protein [Corynebacterium callunae] diamond 294 59.3 0.993254637436762 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium callunae
29333787 29333787 PRJNA1248471_S_NODE_12889_length_190_cov_3.375887_g12789_i0 PRJNA1248471 12889 190 3.375887 6.4141853 Bacteria 2 Bacteria Bacteria 42 0.0349   NR MFP5579076.1 2080302 g12789 i0 41.7 1.56315789473684 48 28 75.8 0 160 17 99 146 MFP5579076.1 tetratricopeptide repeat protein [Acidimicrobiia bacterium] diamond 297 42.4 0.990566037735849 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
31369442 31369442 PRJNA1248471_S_NODE_1816_length_340_cov_16.512027_g1716_i0 PRJNA1248471 1816 340 16.512027 56.1408918 Bifidobacterium vespertilionis 2562524 Bacteria Bacteria 43.9 0.0401   NR WP_150353623.1 2562524 g1716 i0 36.7 0.529411764705882 60 33 52.9 1 156 335 203 257 WP_150353623.1 glycosyltransferase family 2 protein [Bifidobacterium vespertilionis] diamond 180 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium vespertilionis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;