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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1248471" and tax_kingdom = "Bacillati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 9 ✖

bioproject 1

  • PRJNA1248471 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6731296 6731296 PRJNA1248471_S_NODE_12426_length_193_cov_1.062500_g12326_i0 PRJNA1248471 12426 193 1.0625 2.050625 Arthrobacter russicus 172040 Bacteria Bacteria 134 2.22e-36   NR WP_309796647.1 172040 g12326 i0 100 0.994818652849741 64 0 99.5 0 192 1 159 222 WP_309796647.1 ABC transporter substrate-binding protein [Arthrobacter russicus] diamond 192 134 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter russicus
27263361 27263361 PRJNA1248471_S_NODE_5603_length_244_cov_1.641026_g5503_i0 PRJNA1248471 5603 244 1.641026 4.00410344 Nocardia vinacea 96468 Bacteria Bacteria 42.4 0.0499   NR WP_357481875.1 96468 g5503 i0 48.7 0.479508196721311 39 19 48 1 211 95 8 45 WP_357481875.1 hypothetical protein [Nocardia vinacea] diamond 117 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia vinacea
28986716 28986716 PRJNA1248471_S_NODE_22408_length_161_cov_1.500000_g22308_i0 PRJNA1248471 22408 161 1.5 2.415 Corynebacterium 1716 Bacteria Bacteria 58.9 1.27e-8   NR WP_015453155.1 1721 g22308 i0 59.2 1.82608695652174 49 20 91.3 0 3 149 62 110 WP_015453155.1 hypothetical protein [Corynebacterium callunae] diamond 294 59.3 0.993254637436762 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium callunae
29333787 29333787 PRJNA1248471_S_NODE_12889_length_190_cov_3.375887_g12789_i0 PRJNA1248471 12889 190 3.375887 6.4141853 Bacteria 2 Bacteria Bacteria 42 0.0349   NR MFP5579076.1 2080302 g12789 i0 41.7 1.56315789473684 48 28 75.8 0 160 17 99 146 MFP5579076.1 tetratricopeptide repeat protein [Acidimicrobiia bacterium] diamond 297 42.4 0.990566037735849 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
30439414 30439414 PRJNA1248471_S_NODE_21253_length_163_cov_0.719298_g21153_i0 PRJNA1248471 21253 163 0.719298 1.17245574 root 1 Root_unresolved Root_unresolved 50.1 3.26e-5   NR QHG77598.1 1280 g21153 i0 50.8 14.9447852760736 61 23 99.4 1 163 2 134 194 QHG77598.1 hypothetical protein EAX85_13915 [Staphylococcus aureus] diamond 2436 50.1 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
31369442 31369442 PRJNA1248471_S_NODE_1816_length_340_cov_16.512027_g1716_i0 PRJNA1248471 1816 340 16.512027 56.1408918 Bifidobacterium vespertilionis 2562524 Bacteria Bacteria 43.9 0.0401   NR WP_150353623.1 2562524 g1716 i0 36.7 0.529411764705882 60 33 52.9 1 156 335 203 257 WP_150353623.1 glycosyltransferase family 2 protein [Bifidobacterium vespertilionis] diamond 180 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium vespertilionis
32368220 32368220 PRJNA1248471_S_NODE_3079_length_300_cov_1.135458_g2979_i0 PRJNA1248471 3079 300 1.135458 3.406374 Bacteria 2 Bacteria Bacteria 44.3 0.00201   NR WP_309547482.1 1313 g2979 i0 80 0.51 25 5 25 0 163 237 37 61 WP_309547482.1 hypothetical protein, partial [Streptococcus pneumoniae] diamond 153 44.7 0.991051454138702 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae
32381625 32381625 PRJNA1248471_S_NODE_7039_length_227_cov_2.005618_g6939_i0 PRJNA1248471 7039 227 2.005618 4.55275286 Clostridia bacterium 2044939 Bacteria Bacteria 87 7.57e-18   NR NCC78976.1 2044939 g6939 i0 61.7 0.79295154185022 60 23 79.3 0 191 12 526 585 NCC78976.1 hypothetical protein [Clostridia bacterium] diamond 180 87 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
32809719 32809719 PRJNA1248471_S_NODE_17620_length_170_cov_0.760331_g17520_i0 PRJNA1248471 17620 170 0.760331 1.2925627 root 1 Root_unresolved Root_unresolved 59.3 5.52e-10   NR TAQ98585.1 1590 g17520 i0 73.5 1.72941176470588 34 9 60 0 54 155 1 34 TAQ98585.1 hypothetical protein BV221_15430 [Lactiplantibacillus plantarum] diamond 294 59.3 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;