RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1248424" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1248424 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27705824 27705824 PRJNA1248424_P_NODE_8604_length_1953_cov_63.887766_g5524_i2 PRJNA1248424 8604 1953 63.887766 1247.72806998 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 97.8 3.83e-19   NR MFH0952965.1 2026799 g5524 i2 44.4 0.152073732718894 99 54 15.2 1 584 288 104 201 MFH0952965.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP [Verrucomicrobiota bacterium] diamond 297 97.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29441755 29441755 PRJNA1248424_P_NODE_7750_length_2099_cov_77.375617_g5524_i0 PRJNA1248424 7750 2099 77.375617 1624.11420083 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 99.4 1.23e-19   NR MFH0952965.1 2026799 g5524 i0 44.4 0.141495950452596 99 54 14.1 1 1370 1666 104 201 MFH0952965.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP [Verrucomicrobiota bacterium] diamond 297 99.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30453022 30453022 PRJNA1248424_P_NODE_60253_length_275_cov_1.252475_g54185_i0 PRJNA1248424 60253 275 1.252475 3.44430625 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 86.3 1.53e-18   NR MFH0952965.1 2026799 g54185 i0 44 1.97454545454545 91 50 99.3 1 273 1 107 196 MFH0952965.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP [Verrucomicrobiota bacterium] diamond 543 86.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31812051 31812051 PRJNA1248424_P_NODE_70717_length_250_cov_0.870056_g64648_i0 PRJNA1248424 70717 250 0.870056 2.17514 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0173   NR MEM9016560.1 2026799 g64648 i0 41.8 0.66 55 29 62.4 2 76 231 60 114 MEM9016560.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 165 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31843503 31843503 PRJNA1248424_P_NODE_68557_length_252_cov_1.167598_g62488_i0 PRJNA1248424 68557 252 1.167598 2.94234696 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0283   NR KAB2642523.1 2026799 g62488 i0 44.1 0.702380952380952 59 33 70.2 0 2 178 64 122 KAB2642523.1 MAG: ankyrin repeat domain-containing protein [Verrucomicrobiota bacterium] diamond 177 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;